miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13440 5' -65.4 NC_003409.1 + 110983 1.07 0.000536
Target:  5'- uGAGGGCGAAGGCCGGCGCCCUCCCGAc -3'
miRNA:   3'- -CUCCCGCUUCCGGCCGCGGGAGGGCU- -5'
13440 5' -65.4 NC_003409.1 + 24637 0.66 0.48426
Target:  5'- gGAGGGgGAuc-CCGGCGCgccacCCUCCCc- -3'
miRNA:   3'- -CUCCCgCUuccGGCCGCG-----GGAGGGcu -5'
13440 5' -65.4 NC_003409.1 + 24034 0.66 0.475297
Target:  5'- uGGGGGCcgGGAGGauGGgGCCCcgCCCa- -3'
miRNA:   3'- -CUCCCG--CUUCCggCCgCGGGa-GGGcu -5'
13440 5' -65.4 NC_003409.1 + 78274 0.66 0.43179
Target:  5'- cGGGGCagccguGGCUGGCGCag-CCCGGu -3'
miRNA:   3'- cUCCCGcuu---CCGGCCGCGggaGGGCU- -5'
13440 5' -65.4 NC_003409.1 + 87184 0.68 0.344887
Target:  5'- gGAGGGCGu-GGCCGacGCGCCa-CCCu- -3'
miRNA:   3'- -CUCCCGCuuCCGGC--CGCGGgaGGGcu -5'
13440 5' -65.4 NC_003409.1 + 17920 0.68 0.344887
Target:  5'- aAGGGCGGggucgcGGGUCGGgGCCgCUCCa-- -3'
miRNA:   3'- cUCCCGCU------UCCGGCCgCGG-GAGGgcu -5'
13440 5' -65.4 NC_003409.1 + 24817 0.66 0.48426
Target:  5'- gGAGGGgGAuc-CCGGCGCgccacCCUCCCc- -3'
miRNA:   3'- -CUCCCgCUuccGGCCGCG-----GGAGGGcu -5'
13440 5' -65.4 NC_003409.1 + 24787 0.66 0.48426
Target:  5'- gGAGGGgGAuc-CCGGCGCgccacCCUCCCc- -3'
miRNA:   3'- -CUCCCgCUuccGGCCGCG-----GGAGGGcu -5'
13440 5' -65.4 NC_003409.1 + 24697 0.66 0.48426
Target:  5'- gGAGGGgGAuc-CCGGCGCgccacCCUCCCc- -3'
miRNA:   3'- -CUCCCgCUuccGGCCGCG-----GGAGGGcu -5'
13440 5' -65.4 NC_003409.1 + 24607 0.66 0.48426
Target:  5'- gGAGGGgGAuc-CCGGCGCgccacCCUCCCc- -3'
miRNA:   3'- -CUCCCgCUuccGGCCGCG-----GGAGGGcu -5'
13440 5' -65.4 NC_003409.1 + 60877 0.67 0.398712
Target:  5'- cGAGGGCGGGuccuuucucuGCUGGUGCCCcacgcgCCCGc -3'
miRNA:   3'- -CUCCCGCUUc---------CGGCCGCGGGa-----GGGCu -5'
13440 5' -65.4 NC_003409.1 + 77444 0.75 0.121128
Target:  5'- -cGGGCGAAGGCCuGGCGCUgagCCCa- -3'
miRNA:   3'- cuCCCGCUUCCGG-CCGCGGga-GGGcu -5'
13440 5' -65.4 NC_003409.1 + 24727 0.66 0.48426
Target:  5'- gGAGGGgGAuc-CCGGCGCgccacCCUCCCc- -3'
miRNA:   3'- -CUCCCgCUuccGGCCGCG-----GGAGGGcu -5'
13440 5' -65.4 NC_003409.1 + 127118 0.72 0.183019
Target:  5'- aAGGGCGc--GCCGGUGCuCCgUCCCGAc -3'
miRNA:   3'- cUCCCGCuucCGGCCGCG-GG-AGGGCU- -5'
13440 5' -65.4 NC_003409.1 + 118874 0.66 0.48426
Target:  5'- gGAGuGGCGguGGgCGGgGCCCcuauaaUCCUGGc -3'
miRNA:   3'- -CUC-CCGCuuCCgGCCgCGGG------AGGGCU- -5'
13440 5' -65.4 NC_003409.1 + 24757 0.66 0.48426
Target:  5'- gGAGGGgGAuc-CCGGCGCgccacCCUCCCc- -3'
miRNA:   3'- -CUCCCgCUuccGGCCGCG-----GGAGGGcu -5'
13440 5' -65.4 NC_003409.1 + 24847 0.66 0.48426
Target:  5'- gGAGGGgGAuc-CCGGCGCgccacCCUCCCc- -3'
miRNA:   3'- -CUCCCgCUuccGGCCGCG-----GGAGGGcu -5'
13440 5' -65.4 NC_003409.1 + 113024 0.68 0.344157
Target:  5'- aAGGccuccCGGAGGCCGGUaucugccGCCCcuaUCCCGAg -3'
miRNA:   3'- cUCCc----GCUUCCGGCCG-------CGGG---AGGGCU- -5'
13440 5' -65.4 NC_003409.1 + 24667 0.66 0.48426
Target:  5'- gGAGGGgGAuc-CCGGCGCgccacCCUCCCc- -3'
miRNA:   3'- -CUCCCgCUuccGGCCGCG-----GGAGGGcu -5'
13440 5' -65.4 NC_003409.1 + 54283 0.67 0.382793
Target:  5'- cGGGGUGcacuGGCUGGaGCCCUUCCa- -3'
miRNA:   3'- cUCCCGCuu--CCGGCCgCGGGAGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.