miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13440 5' -65.4 NC_003409.1 + 24800 0.66 0.440307
Target:  5'- gGAGGGUGgcGcGCCGGgauccCCCUCCgGGg -3'
miRNA:   3'- -CUCCCGCuuC-CGGCCgc---GGGAGGgCU- -5'
13440 5' -65.4 NC_003409.1 + 24770 0.66 0.440307
Target:  5'- gGAGGGUGgcGcGCCGGgauccCCCUCCgGGg -3'
miRNA:   3'- -CUCCCGCuuC-CGGCCgc---GGGAGGgCU- -5'
13440 5' -65.4 NC_003409.1 + 78274 0.66 0.43179
Target:  5'- cGGGGCagccguGGCUGGCGCag-CCCGGu -3'
miRNA:   3'- cUCCCGcuu---CCGGCCGCGggaGGGCU- -5'
13440 5' -65.4 NC_003409.1 + 93994 0.67 0.42337
Target:  5'- gGAGGaGCGAcguAGGCacgGGCuGCCagaaaUCCCGGa -3'
miRNA:   3'- -CUCC-CGCU---UCCGg--CCG-CGGg----AGGGCU- -5'
13440 5' -65.4 NC_003409.1 + 55440 0.67 0.406829
Target:  5'- -cGGGCGGcaaGCCGcCGCCCaugUCCCGGa -3'
miRNA:   3'- cuCCCGCUuc-CGGCcGCGGG---AGGGCU- -5'
13440 5' -65.4 NC_003409.1 + 60877 0.67 0.398712
Target:  5'- cGAGGGCGGGuccuuucucuGCUGGUGCCCcacgcgCCCGc -3'
miRNA:   3'- -CUCCCGCUUc---------CGGCCGCGGGa-----GGGCu -5'
13440 5' -65.4 NC_003409.1 + 35877 0.67 0.3907
Target:  5'- uGGGGCucugGAAGGCgaagcgauccauUGGCGCguagUCUCCCGAg -3'
miRNA:   3'- cUCCCG----CUUCCG------------GCCGCG----GGAGGGCU- -5'
13440 5' -65.4 NC_003409.1 + 54283 0.67 0.382793
Target:  5'- cGGGGUGcacuGGCUGGaGCCCUUCCa- -3'
miRNA:   3'- cUCCCGCuu--CCGGCCgCGGGAGGGcu -5'
13440 5' -65.4 NC_003409.1 + 51936 0.68 0.374994
Target:  5'- aAGGGU--GGGCuaCGGCGCCCUCUggCGGc -3'
miRNA:   3'- cUCCCGcuUCCG--GCCGCGGGAGG--GCU- -5'
13440 5' -65.4 NC_003409.1 + 52328 0.68 0.359721
Target:  5'- cGGuGGCGggGGCaCGG-GCUCUUCUGGg -3'
miRNA:   3'- cUC-CCGCuuCCG-GCCgCGGGAGGGCU- -5'
13440 5' -65.4 NC_003409.1 + 87184 0.68 0.344887
Target:  5'- gGAGGGCGu-GGCCGacGCGCCa-CCCu- -3'
miRNA:   3'- -CUCCCGCuuCCGGC--CGCGGgaGGGcu -5'
13440 5' -65.4 NC_003409.1 + 17920 0.68 0.344887
Target:  5'- aAGGGCGGggucgcGGGUCGGgGCCgCUCCa-- -3'
miRNA:   3'- cUCCCGCU------UCCGGCCgCGG-GAGGgcu -5'
13440 5' -65.4 NC_003409.1 + 113024 0.68 0.344157
Target:  5'- aAGGccuccCGGAGGCCGGUaucugccGCCCcuaUCCCGAg -3'
miRNA:   3'- cUCCc----GCUUCCGGCCG-------CGGG---AGGGCU- -5'
13440 5' -65.4 NC_003409.1 + 134479 0.69 0.290016
Target:  5'- aGAGGGUguccccGggGGCgGuGCGCCCUCuaGGc -3'
miRNA:   3'- -CUCCCG------CuuCCGgC-CGCGGGAGggCU- -5'
13440 5' -65.4 NC_003409.1 + 94439 0.7 0.259335
Target:  5'- aGAGGGUGGacAGuGCCugGGUGCUgUCCCGGg -3'
miRNA:   3'- -CUCCCGCU--UC-CGG--CCGCGGgAGGGCU- -5'
13440 5' -65.4 NC_003409.1 + 111143 0.72 0.205964
Target:  5'- gGAGGGCGccGGCCuuCGCCCUCaguCCGGg -3'
miRNA:   3'- -CUCCCGCuuCCGGccGCGGGAG---GGCU- -5'
13440 5' -65.4 NC_003409.1 + 115592 0.72 0.18742
Target:  5'- uGGGGUG-GGGCCGGUGgCCUCCUc- -3'
miRNA:   3'- cUCCCGCuUCCGGCCGCgGGAGGGcu -5'
13440 5' -65.4 NC_003409.1 + 127118 0.72 0.183019
Target:  5'- aAGGGCGc--GCCGGUGCuCCgUCCCGAc -3'
miRNA:   3'- cUCCCGCuucCGGCCGCG-GG-AGGGCU- -5'
13440 5' -65.4 NC_003409.1 + 77444 0.75 0.121128
Target:  5'- -cGGGCGAAGGCCuGGCGCUgagCCCa- -3'
miRNA:   3'- cuCCCGCUUCCGG-CCGCGGga-GGGcu -5'
13440 5' -65.4 NC_003409.1 + 110983 1.07 0.000536
Target:  5'- uGAGGGCGAAGGCCGGCGCCCUCCCGAc -3'
miRNA:   3'- -CUCCCGCUUCCGGCCGCGGGAGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.