miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13441 3' -57.1 NC_003409.1 + 81069 0.66 0.868865
Target:  5'- gGCCUCACGCagggaacaacaGAGAGAgUGCA--CCUCCu -3'
miRNA:   3'- -UGGAGUGCG-----------CUCUCU-GUGUucGGGGG- -5'
13441 3' -57.1 NC_003409.1 + 94794 0.66 0.868865
Target:  5'- aACCUCGCGCcuacAGuGGCcCAGGCCUg- -3'
miRNA:   3'- -UGGAGUGCGc---UCuCUGuGUUCGGGgg -5'
13441 3' -57.1 NC_003409.1 + 48037 0.66 0.85367
Target:  5'- uACCUcCACGCaGGGAGACuucACAgacggAGCCgUCa -3'
miRNA:   3'- -UGGA-GUGCG-CUCUCUG---UGU-----UCGGgGG- -5'
13441 3' -57.1 NC_003409.1 + 66785 0.66 0.85367
Target:  5'- cGCCUCA-GCGAGGaccuGCGCAGaaagauGCCCuCCa -3'
miRNA:   3'- -UGGAGUgCGCUCUc---UGUGUU------CGGG-GG- -5'
13441 3' -57.1 NC_003409.1 + 111497 0.66 0.852889
Target:  5'- aACCUCguagagagauacGCGCGGGguuuccuGGACAC--GCCCUCu -3'
miRNA:   3'- -UGGAG------------UGCGCUC-------UCUGUGuuCGGGGG- -5'
13441 3' -57.1 NC_003409.1 + 49237 0.66 0.845771
Target:  5'- cGCCaggaaCACGCGAaugcagcaGuAGACGCAGGCgCCUa -3'
miRNA:   3'- -UGGa----GUGCGCU--------C-UCUGUGUUCGgGGG- -5'
13441 3' -57.1 NC_003409.1 + 90701 0.66 0.837679
Target:  5'- cCCUCgACGCGucauAGcGACuCGcAGCCCCCc -3'
miRNA:   3'- uGGAG-UGCGC----UCuCUGuGU-UCGGGGG- -5'
13441 3' -57.1 NC_003409.1 + 67654 0.66 0.836859
Target:  5'- uAUC-CugGgGAGuGACACAgacgaggAGCCCUCg -3'
miRNA:   3'- -UGGaGugCgCUCuCUGUGU-------UCGGGGG- -5'
13441 3' -57.1 NC_003409.1 + 125666 0.66 0.829401
Target:  5'- aGCCacaGCaGCGGGAGcCACAgcagcgggAGCCCCa -3'
miRNA:   3'- -UGGag-UG-CGCUCUCuGUGU--------UCGGGGg -5'
13441 3' -57.1 NC_003409.1 + 73120 0.66 0.829401
Target:  5'- gGCCUCcgauUGCaGAcGAGuCGCcuccAGGCCCCCa -3'
miRNA:   3'- -UGGAGu---GCG-CU-CUCuGUG----UUCGGGGG- -5'
13441 3' -57.1 NC_003409.1 + 61963 0.66 0.829401
Target:  5'- uUCgCAUGCGAuGAGaAUACAAGauCCCCCg -3'
miRNA:   3'- uGGaGUGCGCU-CUC-UGUGUUC--GGGGG- -5'
13441 3' -57.1 NC_003409.1 + 87826 0.66 0.829401
Target:  5'- gACCcaUCGCGCauGGGAGGgGCuaguuGCCCCg -3'
miRNA:   3'- -UGG--AGUGCG--CUCUCUgUGuu---CGGGGg -5'
13441 3' -57.1 NC_003409.1 + 58309 0.67 0.820945
Target:  5'- uCCUCuuuuUGCGAG-GACAC--GCCuCCCa -3'
miRNA:   3'- uGGAGu---GCGCUCuCUGUGuuCGG-GGG- -5'
13441 3' -57.1 NC_003409.1 + 92277 0.67 0.803529
Target:  5'- gGCCUCugGgacuUGGGAGcaaauaACGAuGCCCCCc -3'
miRNA:   3'- -UGGAGugC----GCUCUCug----UGUU-CGGGGG- -5'
13441 3' -57.1 NC_003409.1 + 48292 0.67 0.794585
Target:  5'- cUCUaCACGCGAGccGGACGgCAGGCCUa- -3'
miRNA:   3'- uGGA-GUGCGCUC--UCUGU-GUUCGGGgg -5'
13441 3' -57.1 NC_003409.1 + 45074 0.67 0.776269
Target:  5'- ---cCAUGaCGAGAGACACGuccuggacguGGCgCCCCu -3'
miRNA:   3'- uggaGUGC-GCUCUCUGUGU----------UCG-GGGG- -5'
13441 3' -57.1 NC_003409.1 + 87708 0.67 0.776269
Target:  5'- cACCUCugGCGccacAGGGAUu---GCUCCCc -3'
miRNA:   3'- -UGGAGugCGC----UCUCUGuguuCGGGGG- -5'
13441 3' -57.1 NC_003409.1 + 114386 0.68 0.757441
Target:  5'- gACaCUCAUgGCGAcagcgggguGGGGCugGcaaGGCCCCCa -3'
miRNA:   3'- -UG-GAGUG-CGCU---------CUCUGugU---UCGGGGG- -5'
13441 3' -57.1 NC_003409.1 + 131206 0.68 0.747857
Target:  5'- gGCCaugaGCGCGuacGGGGCACu-GCUCCCa -3'
miRNA:   3'- -UGGag--UGCGCu--CUCUGUGuuCGGGGG- -5'
13441 3' -57.1 NC_003409.1 + 106976 0.69 0.698606
Target:  5'- gUCUCACGgaCGggcuugucaGGAGGUGCGGGCCCCCg -3'
miRNA:   3'- uGGAGUGC--GC---------UCUCUGUGUUCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.