miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13442 3' -61.9 NC_003409.1 + 83132 0.68 0.522743
Target:  5'- cCCCCGuGGCGCacaACCGUcugGGCCCaCGu -3'
miRNA:   3'- uGGGGUuCCGCG---UGGCA---UCGGGcGCu -5'
13442 3' -61.9 NC_003409.1 + 33999 0.68 0.522743
Target:  5'- uCCCCAcaacaaggguacGGGCGCGCCaGggacagcGCCCGCc- -3'
miRNA:   3'- uGGGGU------------UCCGCGUGG-Cau-----CGGGCGcu -5'
13442 3' -61.9 NC_003409.1 + 111983 0.68 0.522743
Target:  5'- gGCCCCcGGGCGUgguGCCGgaugcagGGCCUGgccuCGAa -3'
miRNA:   3'- -UGGGGuUCCGCG---UGGCa------UCGGGC----GCU- -5'
13442 3' -61.9 NC_003409.1 + 34107 0.68 0.513246
Target:  5'- cCCCCAGGaGCGCGCCuc-GCUgGCGc -3'
miRNA:   3'- uGGGGUUC-CGCGUGGcauCGGgCGCu -5'
13442 3' -61.9 NC_003409.1 + 134307 0.68 0.503821
Target:  5'- uGCCUagAGGGCGCACCGcc-CCCGgGGa -3'
miRNA:   3'- -UGGGg-UUCCGCGUGGCaucGGGCgCU- -5'
13442 3' -61.9 NC_003409.1 + 86622 0.68 0.494471
Target:  5'- gACCUC-GGGCGCcgccuauCCGUGGCCUGUc- -3'
miRNA:   3'- -UGGGGuUCCGCGu------GGCAUCGGGCGcu -5'
13442 3' -61.9 NC_003409.1 + 8911 0.69 0.440177
Target:  5'- cACCCCucGaGUGCGCCGc-GCCUGCGc -3'
miRNA:   3'- -UGGGGuuC-CGCGUGGCauCGGGCGCu -5'
13442 3' -61.9 NC_003409.1 + 54287 0.69 0.422843
Target:  5'- uUCCCGGGGUGCACUGgcuggAGCCCu--- -3'
miRNA:   3'- uGGGGUUCCGCGUGGCa----UCGGGcgcu -5'
13442 3' -61.9 NC_003409.1 + 109675 0.69 0.421987
Target:  5'- uCCCCGGGGCGCGCgCGcaUAGCCgucuuggUGUGGg -3'
miRNA:   3'- uGGGGUUCCGCGUG-GC--AUCGG-------GCGCU- -5'
13442 3' -61.9 NC_003409.1 + 130759 0.69 0.414331
Target:  5'- gGCCCagcuGGGCaGCACCGUccCCCGCa- -3'
miRNA:   3'- -UGGGgu--UCCG-CGUGGCAucGGGCGcu -5'
13442 3' -61.9 NC_003409.1 + 108365 0.7 0.405925
Target:  5'- cGCCCCGAGauCGCACUGgguGCCUGCu- -3'
miRNA:   3'- -UGGGGUUCc-GCGUGGCau-CGGGCGcu -5'
13442 3' -61.9 NC_003409.1 + 51771 0.7 0.389438
Target:  5'- cGCCgCCAgAGG-GCGCCGUAGCCCa--- -3'
miRNA:   3'- -UGG-GGU-UCCgCGUGGCAUCGGGcgcu -5'
13442 3' -61.9 NC_003409.1 + 75203 0.7 0.372606
Target:  5'- gGCCaaaCAGGGCGCAggucgccCCGU-GCCUGCGu -3'
miRNA:   3'- -UGGg--GUUCCGCGU-------GGCAuCGGGCGCu -5'
13442 3' -61.9 NC_003409.1 + 11486 0.71 0.35781
Target:  5'- aACCCCGGGGCGaccCGgCGUGGUugCCGUGGa -3'
miRNA:   3'- -UGGGGUUCCGC---GUgGCAUCG--GGCGCU- -5'
13442 3' -61.9 NC_003409.1 + 130232 0.71 0.345672
Target:  5'- aGCCUC-AGGCagucuuucauguccgGCGCCaccacGUAGCCCGCGGa -3'
miRNA:   3'- -UGGGGuUCCG---------------CGUGG-----CAUCGGGCGCU- -5'
13442 3' -61.9 NC_003409.1 + 109303 0.72 0.300116
Target:  5'- uACCUagcuGGGCGCGCCGUcuugGGCCCaCGGg -3'
miRNA:   3'- -UGGGgu--UCCGCGUGGCA----UCGGGcGCU- -5'
13442 3' -61.9 NC_003409.1 + 33041 0.74 0.222146
Target:  5'- uGCCCCAaaAGGCGagGCaGUAGCCCGCc- -3'
miRNA:   3'- -UGGGGU--UCCGCg-UGgCAUCGGGCGcu -5'
13442 3' -61.9 NC_003409.1 + 107969 0.75 0.17883
Target:  5'- aGCUCCAgGGGCGUgcccACCGUGGCCUGCu- -3'
miRNA:   3'- -UGGGGU-UCCGCG----UGGCAUCGGGCGcu -5'
13442 3' -61.9 NC_003409.1 + 111337 1.08 0.000914
Target:  5'- uACCCCAAGGCGCACCGUAGCCCGCGAa -3'
miRNA:   3'- -UGGGGUUCCGCGUGGCAUCGGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.