miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13442 5' -55.9 NC_003409.1 + 64955 0.66 0.919925
Target:  5'- gCCC-CCGGAGAU--GGGCuGGUa-- -3'
miRNA:   3'- aGGGcGGCCUCUAuuUCCGcCCAacc -5'
13442 5' -55.9 NC_003409.1 + 24007 0.66 0.913609
Target:  5'- aUCUCGCCucugggugguuucGGuAGAUGGGGGCcGGGaggaUGGg -3'
miRNA:   3'- -AGGGCGG-------------CC-UCUAUUUCCG-CCCa---ACC- -5'
13442 5' -55.9 NC_003409.1 + 86962 0.66 0.908229
Target:  5'- --aUGCUGGAGAUAGAuaugcaguGGgGGGUuaUGGa -3'
miRNA:   3'- aggGCGGCCUCUAUUU--------CCgCCCA--ACC- -5'
13442 5' -55.9 NC_003409.1 + 105206 0.66 0.902028
Target:  5'- -gUCGCCGGGGGaguGGGCGG--UGGc -3'
miRNA:   3'- agGGCGGCCUCUauuUCCGCCcaACC- -5'
13442 5' -55.9 NC_003409.1 + 26969 0.66 0.895595
Target:  5'- gUCCGgugugggcggauCCGGAGGgaaggAAGGGCGGGgcgcgccguguuUUGGa -3'
miRNA:   3'- aGGGC------------GGCCUCUa----UUUCCGCCC------------AACC- -5'
13442 5' -55.9 NC_003409.1 + 85711 0.66 0.888933
Target:  5'- aCCCGCUuaGGAGuuggcUAuAGGCGGGa--- -3'
miRNA:   3'- aGGGCGG--CCUCu----AUuUCCGCCCaacc -5'
13442 5' -55.9 NC_003409.1 + 126866 0.67 0.874938
Target:  5'- -gCCGgUGGAGGUAAAGguguugcgggaGCGGGUgaaGGa -3'
miRNA:   3'- agGGCgGCCUCUAUUUC-----------CGCCCAa--CC- -5'
13442 5' -55.9 NC_003409.1 + 136950 0.67 0.867614
Target:  5'- cCCCGUgGGguuaGGggAAAGGgGGGaUGGg -3'
miRNA:   3'- aGGGCGgCC----UCuaUUUCCgCCCaACC- -5'
13442 5' -55.9 NC_003409.1 + 133106 0.67 0.860079
Target:  5'- aUCCCgcgGCCGGuccGGAUgccguGAAGGCGGcGgUGGc -3'
miRNA:   3'- -AGGG---CGGCC---UCUA-----UUUCCGCC-CaACC- -5'
13442 5' -55.9 NC_003409.1 + 51511 0.67 0.860079
Target:  5'- aUCCCGCCGGuuGGUGGuGuGUGGGa--- -3'
miRNA:   3'- -AGGGCGGCCu-CUAUUuC-CGCCCaacc -5'
13442 5' -55.9 NC_003409.1 + 105448 0.68 0.810802
Target:  5'- -aCUGCUGGcAGAgcuGGGCcGGUUGGg -3'
miRNA:   3'- agGGCGGCC-UCUauuUCCGcCCAACC- -5'
13442 5' -55.9 NC_003409.1 + 35934 0.69 0.793003
Target:  5'- gCCUaguuGCCGGAGGUGggugauuugGAGGCGGaagGGg -3'
miRNA:   3'- aGGG----CGGCCUCUAU---------UUCCGCCcaaCC- -5'
13442 5' -55.9 NC_003409.1 + 33252 0.69 0.765243
Target:  5'- aUCUC-CUGGAGA--AGGGUGGGUgGGg -3'
miRNA:   3'- -AGGGcGGCCUCUauUUCCGCCCAaCC- -5'
13442 5' -55.9 NC_003409.1 + 30960 0.7 0.736425
Target:  5'- gCgUGCUGGAGGcGGGGGUGGGUUcagcGGg -3'
miRNA:   3'- aGgGCGGCCUCUaUUUCCGCCCAA----CC- -5'
13442 5' -55.9 NC_003409.1 + 74557 0.7 0.736425
Target:  5'- aUCCGCCGGAGAcuccGGGCcgaaggaagcgGGGgaGGg -3'
miRNA:   3'- aGGGCGGCCUCUauu-UCCG-----------CCCaaCC- -5'
13442 5' -55.9 NC_003409.1 + 94324 0.7 0.726626
Target:  5'- aCCgGCUGGGGG---GGGCGGuGUUGa -3'
miRNA:   3'- aGGgCGGCCUCUauuUCCGCC-CAACc -5'
13442 5' -55.9 NC_003409.1 + 54700 0.7 0.706794
Target:  5'- --aCGCCGGAGA--GAGGUGGGa--- -3'
miRNA:   3'- aggGCGGCCUCUauUUCCGCCCaacc -5'
13442 5' -55.9 NC_003409.1 + 123783 0.71 0.639947
Target:  5'- uUCCUGCCaGGGGGUGAcuagcuucccaggcuAGGCGGGc--- -3'
miRNA:   3'- -AGGGCGG-CCUCUAUU---------------UCCGCCCaacc -5'
13442 5' -55.9 NC_003409.1 + 51190 0.71 0.635863
Target:  5'- uUCCCGUacugGGGGAggcccAAGGCGGGUacgccaUGGu -3'
miRNA:   3'- -AGGGCGg---CCUCUau---UUCCGCCCA------ACC- -5'
13442 5' -55.9 NC_003409.1 + 10763 0.72 0.605252
Target:  5'- aCuuGUCGGAGAUAGuGGCGGaccUGGg -3'
miRNA:   3'- aGggCGGCCUCUAUUuCCGCCca-ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.