miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13444 3' -57.2 NC_003409.1 + 7743 0.66 0.848114
Target:  5'- gGCGUGcCGCGu--UCGCCCaAGCAUc -3'
miRNA:   3'- -UGCACcGCGCcauAGCGGGaUCGUAc -5'
13444 3' -57.2 NC_003409.1 + 44540 0.66 0.848114
Target:  5'- -gGUGGCGCGGUAcgauccucUCGCuCCaGGaCAg- -3'
miRNA:   3'- ugCACCGCGCCAU--------AGCG-GGaUC-GUac -5'
13444 3' -57.2 NC_003409.1 + 19761 0.66 0.823269
Target:  5'- gACGcUGGCGUGGUAUCGgCCa------ -3'
miRNA:   3'- -UGC-ACCGCGCCAUAGCgGGaucguac -5'
13444 3' -57.2 NC_003409.1 + 81018 0.66 0.823269
Target:  5'- -aGUGGCGCGGcgaagacGUCGCC--AGCAc- -3'
miRNA:   3'- ugCACCGCGCCa------UAGCGGgaUCGUac -5'
13444 3' -57.2 NC_003409.1 + 126400 0.66 0.805817
Target:  5'- gGCGUGGCG-GaGUAUCGCCaucgCUGG-AUGa -3'
miRNA:   3'- -UGCACCGCgC-CAUAGCGG----GAUCgUAC- -5'
13444 3' -57.2 NC_003409.1 + 134665 0.66 0.804036
Target:  5'- cGCGUugguggaGGCGUGuUGUCGCCCaagauacUAGCAUa -3'
miRNA:   3'- -UGCA-------CCGCGCcAUAGCGGG-------AUCGUAc -5'
13444 3' -57.2 NC_003409.1 + 6632 0.67 0.787731
Target:  5'- aAC-UGGCgGCGGUcuaugccgauguGUCaGCCCUAGcCAUGg -3'
miRNA:   3'- -UGcACCG-CGCCA------------UAG-CGGGAUC-GUAC- -5'
13444 3' -57.2 NC_003409.1 + 96078 0.67 0.76908
Target:  5'- gAUGUgGGCGUGGUGcacaccgaCGCCCUgAGCcgGg -3'
miRNA:   3'- -UGCA-CCGCGCCAUa-------GCGGGA-UCGuaC- -5'
13444 3' -57.2 NC_003409.1 + 52049 0.68 0.749938
Target:  5'- -aGUGGCGCGGUcuccGUCuGaCCCUGcGCGg- -3'
miRNA:   3'- ugCACCGCGCCA----UAG-C-GGGAU-CGUac -5'
13444 3' -57.2 NC_003409.1 + 74243 0.7 0.618627
Target:  5'- uCGaUGGCGUGGUGUCGgCuUCUGGCAc- -3'
miRNA:   3'- uGC-ACCGCGCCAUAGC-G-GGAUCGUac -5'
13444 3' -57.2 NC_003409.1 + 10087 0.71 0.55746
Target:  5'- gACGUGGgGUucccGcUGUCGCCCUgAGCGUGa -3'
miRNA:   3'- -UGCACCgCG----CcAUAGCGGGA-UCGUAC- -5'
13444 3' -57.2 NC_003409.1 + 134468 0.74 0.389252
Target:  5'- cCG-GGgGCGGUG-CGCCCUcuaGGCAUGg -3'
miRNA:   3'- uGCaCCgCGCCAUaGCGGGA---UCGUAC- -5'
13444 3' -57.2 NC_003409.1 + 113287 1.08 0.002064
Target:  5'- uACGUGGCGCGGUAUCGCCCUAGCAUGg -3'
miRNA:   3'- -UGCACCGCGCCAUAGCGGGAUCGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.