miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13444 5' -56.3 NC_003409.1 + 41160 0.67 0.864734
Target:  5'- uGUACGGGcagccucuuguggaACAGauUCGCCACGagcuggcGCCCa -3'
miRNA:   3'- cCGUGCCC--------------UGUCgcAGUGGUGU-------UGGG- -5'
13444 5' -56.3 NC_003409.1 + 86234 0.67 0.860209
Target:  5'- cGUGCGGGACGGUauuuuUCGgCGCAuCCCc -3'
miRNA:   3'- cCGUGCCCUGUCGc----AGUgGUGUuGGG- -5'
13444 5' -56.3 NC_003409.1 + 119801 0.67 0.852506
Target:  5'- aGGCGcCGGcGugGGCGcCGCgCGCGugCUc -3'
miRNA:   3'- -CCGU-GCC-CugUCGCaGUG-GUGUugGG- -5'
13444 5' -56.3 NC_003409.1 + 131812 0.67 0.844606
Target:  5'- uGCAgGGGACuGCagcucUCACUACccGCCCa -3'
miRNA:   3'- cCGUgCCCUGuCGc----AGUGGUGu-UGGG- -5'
13444 5' -56.3 NC_003409.1 + 110150 0.67 0.839773
Target:  5'- gGGCGCGGaACAGCaGUgCGCCuaaaacuaucucaAACCCg -3'
miRNA:   3'- -CCGUGCCcUGUCG-CA-GUGGug-----------UUGGG- -5'
13444 5' -56.3 NC_003409.1 + 125645 0.67 0.835695
Target:  5'- aGCAgCGGGagccccaGCAGCGggaGCCACAGCa- -3'
miRNA:   3'- cCGU-GCCC-------UGUCGCag-UGGUGUUGgg -5'
13444 5' -56.3 NC_003409.1 + 125600 0.67 0.835695
Target:  5'- aGCAgCGGGagccacaGCAGCGggaGCCACAGCa- -3'
miRNA:   3'- cCGU-GCCC-------UGUCGCag-UGGUGUUGgg -5'
13444 5' -56.3 NC_003409.1 + 63569 0.68 0.82824
Target:  5'- gGGCAgCGGcuCAGCGUCACCuauuCUCa -3'
miRNA:   3'- -CCGU-GCCcuGUCGCAGUGGuguuGGG- -5'
13444 5' -56.3 NC_003409.1 + 86567 0.68 0.825724
Target:  5'- uGGCuuuuCGGGACcggaguggcuaacgGGCGUaCGCCGCccgugcgggGACCUg -3'
miRNA:   3'- -CCGu---GCCCUG--------------UCGCA-GUGGUG---------UUGGG- -5'
13444 5' -56.3 NC_003409.1 + 118490 0.68 0.823191
Target:  5'- cGGCGCGGcGCAccccaggaacccggcGCGgcgCACCcCAGCCUc -3'
miRNA:   3'- -CCGUGCCcUGU---------------CGCa--GUGGuGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 88200 0.68 0.81979
Target:  5'- uGGCGCcuuaGGGGgAGCaggUGCUGCAGCCCc -3'
miRNA:   3'- -CCGUG----CCCUgUCGca-GUGGUGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 35906 0.68 0.81979
Target:  5'- aGGCGgaagGGGAgGGCG--ACCACAcACCCu -3'
miRNA:   3'- -CCGUg---CCCUgUCGCagUGGUGU-UGGG- -5'
13444 5' -56.3 NC_003409.1 + 41619 0.68 0.818936
Target:  5'- cGGCGCGuaccGGAUucuugaaAGCGUCGCCGCcaggaGACgCg -3'
miRNA:   3'- -CCGUGC----CCUG-------UCGCAGUGGUG-----UUGgG- -5'
13444 5' -56.3 NC_003409.1 + 3425 0.68 0.818936
Target:  5'- aGGCAUagagguacccgcaGGGAcCAGUGgggGCCGCAgACCCa -3'
miRNA:   3'- -CCGUG-------------CCCU-GUCGCag-UGGUGU-UGGG- -5'
13444 5' -56.3 NC_003409.1 + 81020 0.68 0.811171
Target:  5'- uGGCGCGGcGA-AGaCGUCGCCAgcACCa -3'
miRNA:   3'- -CCGUGCC-CUgUC-GCAGUGGUguUGGg -5'
13444 5' -56.3 NC_003409.1 + 101968 0.68 0.810301
Target:  5'- gGGCAUGGuGACGGCGgUCucggucgaauucgACCGCGAUa- -3'
miRNA:   3'- -CCGUGCC-CUGUCGC-AG-------------UGGUGUUGgg -5'
13444 5' -56.3 NC_003409.1 + 76881 0.68 0.809428
Target:  5'- gGGCGgGGGuugaugacugaACcGCGgaccagccaccaCGCCACAACCCa -3'
miRNA:   3'- -CCGUgCCC-----------UGuCGCa-----------GUGGUGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 91645 0.68 0.802392
Target:  5'- uGGUcCGGGGCAGCaUCACCcCAgauguucuuGCCa -3'
miRNA:   3'- -CCGuGCCCUGUCGcAGUGGuGU---------UGGg -5'
13444 5' -56.3 NC_003409.1 + 131031 0.68 0.802392
Target:  5'- aGGCACaGG-UAGgGUCguuacacagcGCCAgGACCCa -3'
miRNA:   3'- -CCGUGcCCuGUCgCAG----------UGGUgUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 54891 0.68 0.784386
Target:  5'- gGGCgGCGGGugAGgaaaUCGCaCugGACCCg -3'
miRNA:   3'- -CCG-UGCCCugUCgc--AGUG-GugUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.