miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13445 3' -52.4 NC_003409.1 + 109707 0.66 0.97123
Target:  5'- aAGUgGCGCaUGUCcgCCGGCAGUgguccagcugaGGCUUCc -3'
miRNA:   3'- -UCA-UGUG-ACAGa-GGUCGUCG-----------CUGAAG- -5'
13445 3' -52.4 NC_003409.1 + 10014 0.66 0.97123
Target:  5'- cAGUAcCGCUG-CUgCCGGCGGCGGg--- -3'
miRNA:   3'- -UCAU-GUGACaGA-GGUCGUCGCUgaag -5'
13445 3' -52.4 NC_003409.1 + 69363 0.66 0.964852
Target:  5'- cGUGCGC--UCUCCGGCuGCuGCUUUu -3'
miRNA:   3'- uCAUGUGacAGAGGUCGuCGcUGAAG- -5'
13445 3' -52.4 NC_003409.1 + 25821 0.66 0.964852
Target:  5'- cGUucuUUGUCUCCAGaGGCGACgUCu -3'
miRNA:   3'- uCAuguGACAGAGGUCgUCGCUGaAG- -5'
13445 3' -52.4 NC_003409.1 + 96531 0.67 0.953524
Target:  5'- aGGaAUAC-GUCcgUCGGUAGCGGCUUCa -3'
miRNA:   3'- -UCaUGUGaCAGa-GGUCGUCGCUGAAG- -5'
13445 3' -52.4 NC_003409.1 + 79870 0.67 0.938477
Target:  5'- uGGUGCGCgcgcgccaccgauuaUCUCCAaCAGCGGCUUg -3'
miRNA:   3'- -UCAUGUGac-------------AGAGGUcGUCGCUGAAg -5'
13445 3' -52.4 NC_003409.1 + 95865 0.68 0.924078
Target:  5'- -uUACACaGUCUCagGGCGGCGAUUa- -3'
miRNA:   3'- ucAUGUGaCAGAGg-UCGUCGCUGAag -5'
13445 3' -52.4 NC_003409.1 + 105851 0.68 0.912189
Target:  5'- cAGUGCGCU--UUCCAGgAGCGuCUUUg -3'
miRNA:   3'- -UCAUGUGAcaGAGGUCgUCGCuGAAG- -5'
13445 3' -52.4 NC_003409.1 + 77081 0.69 0.892427
Target:  5'- gGGUGCACUGagUgCGGCGGCcGCUa- -3'
miRNA:   3'- -UCAUGUGACagAgGUCGUCGcUGAag -5'
13445 3' -52.4 NC_003409.1 + 41805 0.69 0.870432
Target:  5'- gAG-ACACcgcGUCUCCuGGCGGCGACg-- -3'
miRNA:   3'- -UCaUGUGa--CAGAGG-UCGUCGCUGaag -5'
13445 3' -52.4 NC_003409.1 + 106292 0.72 0.743548
Target:  5'- cGUGCGCaGUUugaggUCCGGCAGC-ACUUCg -3'
miRNA:   3'- uCAUGUGaCAG-----AGGUCGUCGcUGAAG- -5'
13445 3' -52.4 NC_003409.1 + 59978 0.73 0.712711
Target:  5'- uAGUAUacuACUGUCUCgCGGCGGUGGCc-- -3'
miRNA:   3'- -UCAUG---UGACAGAG-GUCGUCGCUGaag -5'
13445 3' -52.4 NC_003409.1 + 113835 1.11 0.003737
Target:  5'- cAGUACACUGUCUCCAGCAGCGACUUCa -3'
miRNA:   3'- -UCAUGUGACAGAGGUCGUCGCUGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.