Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13445 | 5' | -48.6 | NC_003409.1 | + | 45245 | 0.67 | 0.992065 |
Target: 5'- gGGGCGcCACguCCAGGAcgUGUc-- -3' miRNA: 3'- aCCCGCaGUGguGGUUUUuaACGuuu -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 43659 | 0.66 | 0.997454 |
Target: 5'- gGGGUgccaaccucGUCACCGCCGuuagcuacGGAAggGCGAu -3' miRNA: 3'- aCCCG---------CAGUGGUGGU--------UUUUaaCGUUu -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 43379 | 0.69 | 0.974955 |
Target: 5'- aGGGCGUCcaUACCAAAc--UGCAAAg -3' miRNA: 3'- aCCCGCAGugGUGGUUUuuaACGUUU- -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 42181 | 0.7 | 0.958042 |
Target: 5'- gGGGCaaCACCGCCAGAAAc-GCAu- -3' miRNA: 3'- aCCCGcaGUGGUGGUUUUUaaCGUuu -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 41641 | 0.72 | 0.91085 |
Target: 5'- --aGCGUCGCCGCCAGGAGacGCGGu -3' miRNA: 3'- accCGCAGUGGUGGUUUUUaaCGUUu -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 38052 | 0.66 | 0.997879 |
Target: 5'- gGGGCGUCGacuCCGucauguUCAGAAAUaUGCGAGu -3' miRNA: 3'- aCCCGCAGU---GGU------GGUUUUUA-ACGUUU- -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 28552 | 0.68 | 0.987945 |
Target: 5'- gGGGCGUgGCUuCCAAAAAUgggugGCu-- -3' miRNA: 3'- aCCCGCAgUGGuGGUUUUUAa----CGuuu -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 23277 | 0.7 | 0.953898 |
Target: 5'- aUGGGCGcCGCCAUCuuGAAUuUGCu-- -3' miRNA: 3'- -ACCCGCaGUGGUGGuuUUUA-ACGuuu -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 21387 | 0.68 | 0.98947 |
Target: 5'- uUGGGCGUCACCGugGGAAc-UGUGAGu -3' miRNA: 3'- -ACCCGCAGUGGUggUUUUuaACGUUU- -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 11169 | 0.66 | 0.997879 |
Target: 5'- gGGGCucCGCCGCUAGGAggUGCc-- -3' miRNA: 3'- aCCCGcaGUGGUGGUUUUuaACGuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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