Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13445 | 5' | -48.6 | NC_003409.1 | + | 42181 | 0.7 | 0.958042 |
Target: 5'- gGGGCaaCACCGCCAGAAAc-GCAu- -3' miRNA: 3'- aCCCGcaGUGGUGGUUUUUaaCGUuu -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 51764 | 0.71 | 0.944802 |
Target: 5'- gGGGUaUCGCCGCCAGAGGgcGCc-- -3' miRNA: 3'- aCCCGcAGUGGUGGUUUUUaaCGuuu -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 86593 | 0.72 | 0.91085 |
Target: 5'- cGGGCGUaCGCCGCCcg----UGCGGGg -3' miRNA: 3'- aCCCGCA-GUGGUGGuuuuuaACGUUU- -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 41641 | 0.72 | 0.91085 |
Target: 5'- --aGCGUCGCCGCCAGGAGacGCGGu -3' miRNA: 3'- accCGCAGUGGUGGUUUUUaaCGUUu -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 113877 | 1.07 | 0.013432 |
Target: 5'- uUGGGCGUCACCACCAAAAAUUGCAAAa -3' miRNA: 3'- -ACCCGCAGUGGUGGUUUUUAACGUUU- -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 28552 | 0.68 | 0.987945 |
Target: 5'- gGGGCGUgGCUuCCAAAAAUgggugGCu-- -3' miRNA: 3'- aCCCGCAgUGGuGGUUUUUAa----CGuuu -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 43659 | 0.66 | 0.997454 |
Target: 5'- gGGGUgccaaccucGUCACCGCCGuuagcuacGGAAggGCGAu -3' miRNA: 3'- aCCCG---------CAGUGGUGGU--------UUUUaaCGUUu -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 79718 | 0.66 | 0.996326 |
Target: 5'- gUGGcGCGcgcgCACCACCAAAucaggacGcgUGCAc- -3' miRNA: 3'- -ACC-CGCa---GUGGUGGUUU-------UuaACGUuu -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 133308 | 0.67 | 0.99498 |
Target: 5'- aGGGCGUU---GCCAGGAGUggugGCGAu -3' miRNA: 3'- aCCCGCAGuggUGGUUUUUAa---CGUUu -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 95377 | 0.69 | 0.980084 |
Target: 5'- aGGGgGUCGCCGCCAAcgucccGCu-- -3' miRNA: 3'- aCCCgCAGUGGUGGUUuuuaa-CGuuu -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 102297 | 0.69 | 0.974393 |
Target: 5'- cUGGGCagcuacaGUC-CCACCGgcuuggccuucacAGAAUUGCAAAa -3' miRNA: 3'- -ACCCG-------CAGuGGUGGU-------------UUUUAACGUUU- -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 45897 | 0.69 | 0.980084 |
Target: 5'- aGGGCGUCGaCACCAugu-UUGUggGc -3' miRNA: 3'- aCCCGCAGUgGUGGUuuuuAACGuuU- -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 46967 | 0.66 | 0.995731 |
Target: 5'- gGGaGCGUacuGCCGCuCGGAGAUUGCc-- -3' miRNA: 3'- aCC-CGCAg--UGGUG-GUUUUUAACGuuu -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 23277 | 0.7 | 0.953898 |
Target: 5'- aUGGGCGcCGCCAUCuuGAAUuUGCu-- -3' miRNA: 3'- -ACCCGCaGUGGUGGuuUUUA-ACGuuu -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 69704 | 0.71 | 0.929087 |
Target: 5'- cUGGGCGUCGCaggaaaACCuGAGGUUGUu-- -3' miRNA: 3'- -ACCCGCAGUGg-----UGGuUUUUAACGuuu -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 119732 | 0.7 | 0.953898 |
Target: 5'- aUGGGCGcCGCCAUCuuGAAUuUGCu-- -3' miRNA: 3'- -ACCCGCaGUGGUGGuuUUUA-ACGuuu -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 67265 | 0.69 | 0.972056 |
Target: 5'- cUGGGCGUCACCGCgGuccAUUaGCu-- -3' miRNA: 3'- -ACCCGCAGUGGUGgUuuuUAA-CGuuu -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 43379 | 0.69 | 0.974955 |
Target: 5'- aGGGCGUCcaUACCAAAc--UGCAAAg -3' miRNA: 3'- aCCCGCAGugGUGGUUUuuaACGUUU- -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 38052 | 0.66 | 0.997879 |
Target: 5'- gGGGCGUCGacuCCGucauguUCAGAAAUaUGCGAGu -3' miRNA: 3'- aCCCGCAGU---GGU------GGUUUUUA-ACGUUU- -5' |
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13445 | 5' | -48.6 | NC_003409.1 | + | 133546 | 0.67 | 0.99084 |
Target: 5'- aGGGCGUacaGCagGCCGAGAugcUGCAGGa -3' miRNA: 3'- aCCCGCAg--UGg-UGGUUUUua-ACGUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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