Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 13445 | 5' | -48.6 | NC_003409.1 | + | 67265 | 0.69 | 0.972056 |
|
Target: 5'- cUGGGCGUCACCGCgGuccAUUaGCu-- -3' miRNA: 3'- -ACCCGCAGUGGUGgUuuuUAA-CGuuu -5' |
|||||||
| 13445 | 5' | -48.6 | NC_003409.1 | + | 42181 | 0.7 | 0.958042 |
|
Target: 5'- gGGGCaaCACCGCCAGAAAc-GCAu- -3' miRNA: 3'- aCCCGcaGUGGUGGUUUUUaaCGUuu -5' |
|||||||
| 13445 | 5' | -48.6 | NC_003409.1 | + | 23277 | 0.7 | 0.953898 |
|
Target: 5'- aUGGGCGcCGCCAUCuuGAAUuUGCu-- -3' miRNA: 3'- -ACCCGCaGUGGUGGuuUUUA-ACGuuu -5' |
|||||||
| 13445 | 5' | -48.6 | NC_003409.1 | + | 119732 | 0.7 | 0.953898 |
|
Target: 5'- aUGGGCGcCGCCAUCuuGAAUuUGCu-- -3' miRNA: 3'- -ACCCGCaGUGGUGGuuUUUA-ACGuuu -5' |
|||||||
| 13445 | 5' | -48.6 | NC_003409.1 | + | 51764 | 0.71 | 0.944802 |
|
Target: 5'- gGGGUaUCGCCGCCAGAGGgcGCc-- -3' miRNA: 3'- aCCCGcAGUGGUGGUUUUUaaCGuuu -5' |
|||||||
| 13445 | 5' | -48.6 | NC_003409.1 | + | 69704 | 0.71 | 0.929087 |
|
Target: 5'- cUGGGCGUCGCaggaaaACCuGAGGUUGUu-- -3' miRNA: 3'- -ACCCGCAGUGg-----UGGuUUUUAACGuuu -5' |
|||||||
| 13445 | 5' | -48.6 | NC_003409.1 | + | 86593 | 0.72 | 0.91085 |
|
Target: 5'- cGGGCGUaCGCCGCCcg----UGCGGGg -3' miRNA: 3'- aCCCGCA-GUGGUGGuuuuuaACGUUU- -5' |
|||||||
| 13445 | 5' | -48.6 | NC_003409.1 | + | 41641 | 0.72 | 0.91085 |
|
Target: 5'- --aGCGUCGCCGCCAGGAGacGCGGu -3' miRNA: 3'- accCGCAGUGGUGGUUUUUaaCGUUu -5' |
|||||||
| 13445 | 5' | -48.6 | NC_003409.1 | + | 74624 | 0.74 | 0.841643 |
|
Target: 5'- cGGGCGUCGCCgaggucgcccugACCG---GUUGCAGu -3' miRNA: 3'- aCCCGCAGUGG------------UGGUuuuUAACGUUu -5' |
|||||||
| 13445 | 5' | -48.6 | NC_003409.1 | + | 113877 | 1.07 | 0.013432 |
|
Target: 5'- uUGGGCGUCACCACCAAAAAUUGCAAAa -3' miRNA: 3'- -ACCCGCAGUGGUGGUUUUUAACGUUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home