miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13446 3' -57.4 NC_003409.1 + 113438 0.66 0.804605
Target:  5'- -gCCUGCgCCAGC--GACGGGCGg-- -3'
miRNA:   3'- uaGGACGgGGUCGugCUGUCUGCaua -5'
13446 3' -57.4 NC_003409.1 + 20800 0.66 0.795499
Target:  5'- uUCCUGgCCgGGCGCGGCcuGGCGc-- -3'
miRNA:   3'- uAGGACgGGgUCGUGCUGu-CUGCaua -5'
13446 3' -57.4 NC_003409.1 + 81027 0.66 0.78624
Target:  5'- uGUCCUGUCaauGuCGCGGCAGACGg-- -3'
miRNA:   3'- -UAGGACGGgguC-GUGCUGUCUGCaua -5'
13446 3' -57.4 NC_003409.1 + 15939 0.66 0.776839
Target:  5'- uUCgUGCCCCAGCGuCGGcCAGAUc--- -3'
miRNA:   3'- uAGgACGGGGUCGU-GCU-GUCUGcaua -5'
13446 3' -57.4 NC_003409.1 + 32490 0.66 0.776839
Target:  5'- uGUCCUGCCCCAaGCugGAgcaAGAg---- -3'
miRNA:   3'- -UAGGACGGGGU-CGugCUg--UCUgcaua -5'
13446 3' -57.4 NC_003409.1 + 110077 0.66 0.767303
Target:  5'- uUCCUGCgCCUGGC-CGACcAGGCGc-- -3'
miRNA:   3'- uAGGACG-GGGUCGuGCUG-UCUGCaua -5'
13446 3' -57.4 NC_003409.1 + 5979 0.66 0.767303
Target:  5'- -cCCacugGCCCCAGUACGugGGG-GUAc -3'
miRNA:   3'- uaGGa---CGGGGUCGUGCugUCUgCAUa -5'
13446 3' -57.4 NC_003409.1 + 78802 0.67 0.728012
Target:  5'- --gUUGCCuCCGGCuggcgcguaACGGCAGGCGUGa -3'
miRNA:   3'- uagGACGG-GGUCG---------UGCUGUCUGCAUa -5'
13446 3' -57.4 NC_003409.1 + 116201 0.67 0.717952
Target:  5'- cUCCUGCUCC--CugGGCAGGCGg-- -3'
miRNA:   3'- uAGGACGGGGucGugCUGUCUGCaua -5'
13446 3' -57.4 NC_003409.1 + 26902 0.68 0.691462
Target:  5'- -aCCUGaguggaucccccaccCCCCGcGUACGACAGGCGUu- -3'
miRNA:   3'- uaGGAC---------------GGGGU-CGUGCUGUCUGCAua -5'
13446 3' -57.4 NC_003409.1 + 52418 0.68 0.657363
Target:  5'- cGUCCccGCCCCuuggccgccacgccuGCugGAUGGACGUGUu -3'
miRNA:   3'- -UAGGa-CGGGGu--------------CGugCUGUCUGCAUA- -5'
13446 3' -57.4 NC_003409.1 + 47524 0.68 0.645931
Target:  5'- cAUCCgggGCCCCGGC-CGAUauuuuggaguAGAUGUGg -3'
miRNA:   3'- -UAGGa--CGGGGUCGuGCUG----------UCUGCAUa -5'
13446 3' -57.4 NC_003409.1 + 133400 0.7 0.5326
Target:  5'- -cCCUGagaaggaugaucCCCCAGCA-GACAGugGUGUg -3'
miRNA:   3'- uaGGAC------------GGGGUCGUgCUGUCugCAUA- -5'
13446 3' -57.4 NC_003409.1 + 114004 1.03 0.003823
Target:  5'- cAUCCUGCCCCAGCACGACAGACGUAUu -3'
miRNA:   3'- -UAGGACGGGGUCGUGCUGUCUGCAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.