Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13447 | 3' | -46.5 | NC_003409.1 | + | 24440 | 0.66 | 0.999887 |
Target: 5'- cCUGGGGUGcugccggGGCUCCugggguGCUGCcGGg -3' miRNA: 3'- -GGCUCUAC-------UCGAGGuuuu--UGAUGaCC- -5' |
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13447 | 3' | -46.5 | NC_003409.1 | + | 24480 | 0.66 | 0.999887 |
Target: 5'- cCUGGGGUGcugccggGGCUCCugggguGCUGCcGGg -3' miRNA: 3'- -GGCUCUAC-------UCGAGGuuuu--UGAUGaCC- -5' |
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13447 | 3' | -46.5 | NC_003409.1 | + | 24520 | 0.66 | 0.999887 |
Target: 5'- cCUGGGGUGcugccggGGCUCCugggguGCUGCcGGg -3' miRNA: 3'- -GGCUCUAC-------UCGAGGuuuu--UGAUGaCC- -5' |
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13447 | 3' | -46.5 | NC_003409.1 | + | 24560 | 0.66 | 0.999887 |
Target: 5'- cCUGGGGUGcugccggGGCUCCugggguGCUGCcGGg -3' miRNA: 3'- -GGCUCUAC-------UCGAGGuuuu--UGAUGaCC- -5' |
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13447 | 3' | -46.5 | NC_003409.1 | + | 24600 | 0.66 | 0.999887 |
Target: 5'- cCUGGGGUGcugccggGGCUCCugggguGCUGCcGGg -3' miRNA: 3'- -GGCUCUAC-------UCGAGGuuuu--UGAUGaCC- -5' |
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13447 | 3' | -46.5 | NC_003409.1 | + | 24640 | 0.66 | 0.999887 |
Target: 5'- cCUGGGGUGcugccggGGCUCCugggguGCUGCcGGg -3' miRNA: 3'- -GGCUCUAC-------UCGAGGuuuu--UGAUGaCC- -5' |
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13447 | 3' | -46.5 | NC_003409.1 | + | 24680 | 0.66 | 0.999887 |
Target: 5'- cCUGGGGUGcugccggGGCUCCugggguGCUGCcGGg -3' miRNA: 3'- -GGCUCUAC-------UCGAGGuuuu--UGAUGaCC- -5' |
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13447 | 3' | -46.5 | NC_003409.1 | + | 112456 | 0.66 | 0.999953 |
Target: 5'- --aAGGUGAGagaccccgugaUCCAGGAGCgACUGGa -3' miRNA: 3'- ggcUCUACUCg----------AGGUUUUUGaUGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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