Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 13447 | 3' | -46.5 | NC_003409.1 | + | 94182 | 0.69 | 0.998858 |
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Target: 5'- gCCGGuugucGGGCUgCGGAAACUugUGGu -3' miRNA: 3'- -GGCUcua--CUCGAgGUUUUUGAugACC- -5' |
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| 13447 | 3' | -46.5 | NC_003409.1 | + | 52374 | 0.69 | 0.997565 |
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Target: 5'- aCGGGGgcuGGCUUCGGAGGCUAgugcCUGGa -3' miRNA: 3'- gGCUCUac-UCGAGGUUUUUGAU----GACC- -5' |
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| 13447 | 3' | -46.5 | NC_003409.1 | + | 77180 | 0.7 | 0.997097 |
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Target: 5'- -gGAGAaucggGAGCUUCGGAAAgcACUGGg -3' miRNA: 3'- ggCUCUa----CUCGAGGUUUUUgaUGACC- -5' |
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| 13447 | 3' | -46.5 | NC_003409.1 | + | 32658 | 0.7 | 0.997097 |
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Target: 5'- -gGAGAUGGGCgugUCAAGugagauGCUGCUGu -3' miRNA: 3'- ggCUCUACUCGa--GGUUUu-----UGAUGACc -5' |
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| 13447 | 3' | -46.5 | NC_003409.1 | + | 72875 | 0.7 | 0.995938 |
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Target: 5'- gCGGGGUGAGCcugccUCCAGccauauguAAGCUACUa- -3' miRNA: 3'- gGCUCUACUCG-----AGGUU--------UUUGAUGAcc -5' |
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| 13447 | 3' | -46.5 | NC_003409.1 | + | 131116 | 0.84 | 0.530545 |
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Target: 5'- gCGAGGUGGGCuUCCA---GCUGCUGGu -3' miRNA: 3'- gGCUCUACUCG-AGGUuuuUGAUGACC- -5' |
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| 13447 | 3' | -46.5 | NC_003409.1 | + | 66425 | 0.97 | 0.130356 |
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Target: 5'- uCUGAGAUGAGCUCCGAGGACguuCUGGg -3' miRNA: 3'- -GGCUCUACUCGAGGUUUUUGau-GACC- -5' |
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| 13447 | 3' | -46.5 | NC_003409.1 | + | 114924 | 1.14 | 0.012224 |
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Target: 5'- aCCGAGAUGAGCUCCAAAAACUACUGGc -3' miRNA: 3'- -GGCUCUACUCGAGGUUUUUGAUGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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