miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13447 5' -63 NC_003409.1 + 35941 0.66 0.575813
Target:  5'- uCUgCCGGccuAGUugCCGGAGGuGGGUg- -3'
miRNA:   3'- -GAgGGCC---UCGugGGCCUCCuCUCGga -5'
13447 5' -63 NC_003409.1 + 54287 0.66 0.575813
Target:  5'- uUCCCGGGGUGCaCUGGcuG-GAGCCc -3'
miRNA:   3'- gAGGGCCUCGUG-GGCCucCuCUCGGa -5'
13447 5' -63 NC_003409.1 + 34106 0.66 0.556425
Target:  5'- -cCCCaGGAGCGCgccucgCUGGcgccucucaauaAGGAGAGCCg -3'
miRNA:   3'- gaGGG-CCUCGUG------GGCC------------UCCUCUCGGa -5'
13447 5' -63 NC_003409.1 + 127778 0.67 0.527718
Target:  5'- gUCCCGG-GCGCCgCGuaguGGAGGGCg- -3'
miRNA:   3'- gAGGGCCuCGUGG-GCcu--CCUCUCGga -5'
13447 5' -63 NC_003409.1 + 95025 0.67 0.481196
Target:  5'- --gCCGGAauGCAaa-GGAGGAGGGCCa -3'
miRNA:   3'- gagGGCCU--CGUgggCCUCCUCUCGGa -5'
13447 5' -63 NC_003409.1 + 87439 0.68 0.463147
Target:  5'- -aCUCGcAGCACCCuGAGGAGcccGGCCUu -3'
miRNA:   3'- gaGGGCcUCGUGGGcCUCCUC---UCGGA- -5'
13447 5' -63 NC_003409.1 + 73600 0.68 0.463147
Target:  5'- -gCgCGGGGUA-CCGGAGGGGAguuGCCUg -3'
miRNA:   3'- gaGgGCCUCGUgGGCCUCCUCU---CGGA- -5'
13447 5' -63 NC_003409.1 + 11488 0.68 0.454256
Target:  5'- -cCCCGGGGCgACCCGGcguGGuu-GCCg -3'
miRNA:   3'- gaGGGCCUCG-UGGGCCu--CCucuCGGa -5'
13447 5' -63 NC_003409.1 + 61454 0.68 0.428155
Target:  5'- -cCCCGGAGUGCCguaGGAGcGuGGAGCUUa -3'
miRNA:   3'- gaGGGCCUCGUGGg--CCUC-C-UCUCGGA- -5'
13447 5' -63 NC_003409.1 + 118160 0.7 0.354733
Target:  5'- uUCCCGGggaggagGGCACCagguucccggGGAGGAGGGCa- -3'
miRNA:   3'- gAGGGCC-------UCGUGGg---------CCUCCUCUCGga -5'
13447 5' -63 NC_003409.1 + 118252 0.7 0.354733
Target:  5'- uUCCCGGggaggagGGCACCagguucccggGGAGGAGGGCa- -3'
miRNA:   3'- gAGGGCC-------UCGUGGg---------CCUCCUCUCGga -5'
13447 5' -63 NC_003409.1 + 118022 0.7 0.354733
Target:  5'- uUCCCGGggaggagGGCACCagguucccggGGAGGAGGGCa- -3'
miRNA:   3'- gAGGGCC-------UCGUGGg---------CCUCCUCUCGga -5'
13447 5' -63 NC_003409.1 + 118068 0.7 0.354733
Target:  5'- uUCCCGGggaggagGGCACCagguucccggGGAGGAGGGCa- -3'
miRNA:   3'- gAGGGCC-------UCGUGGg---------CCUCCUCUCGga -5'
13447 5' -63 NC_003409.1 + 118114 0.7 0.354733
Target:  5'- uUCCCGGggaggagGGCACCagguucccggGGAGGAGGGCa- -3'
miRNA:   3'- gAGGGCC-------UCGUGGg---------CCUCCUCUCGga -5'
13447 5' -63 NC_003409.1 + 118206 0.7 0.354733
Target:  5'- uUCCCGGggaggagGGCACCagguucccggGGAGGAGGGCa- -3'
miRNA:   3'- gAGGGCC-------UCGUGGg---------CCUCCUCUCGga -5'
13447 5' -63 NC_003409.1 + 24615 0.7 0.347971
Target:  5'- aUCCCGGcGCGccacccucCCCGGAGGGGGaucccggcgcGCCa -3'
miRNA:   3'- gAGGGCCuCGU--------GGGCCUCCUCU----------CGGa -5'
13447 5' -63 NC_003409.1 + 24735 0.7 0.347971
Target:  5'- aUCCCGGcGCGccacccucCCCGGAGGGGGaucccggcgcGCCa -3'
miRNA:   3'- gAGGGCCuCGU--------GGGCCUCCUCU----------CGGa -5'
13447 5' -63 NC_003409.1 + 24675 0.7 0.347971
Target:  5'- aUCCCGGcGCGccacccucCCCGGAGGGGGaucccggcgcGCCa -3'
miRNA:   3'- gAGGGCCuCGU--------GGGCCUCCUCU----------CGGa -5'
13447 5' -63 NC_003409.1 + 24795 0.7 0.347971
Target:  5'- aUCCCGGcGCGccacccucCCCGGAGGGGGaucccggcgcGCCa -3'
miRNA:   3'- gAGGGCCuCGU--------GGGCCUCCUCU----------CGGa -5'
13447 5' -63 NC_003409.1 + 97921 0.71 0.28547
Target:  5'- -aCCCGGAccuaaaaACCCGGAGGAGgAGuCCUg -3'
miRNA:   3'- gaGGGCCUcg-----UGGGCCUCCUC-UC-GGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.