Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13448 | 3' | -53.9 | NC_003409.1 | + | 73506 | 0.66 | 0.952041 |
Target: 5'- --uGACaaaCUGGCUCAGGGCAGGg- -3' miRNA: 3'- guuUUGcagGACCGGGUCCUGUCUgu -5' |
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13448 | 3' | -53.9 | NC_003409.1 | + | 95598 | 0.66 | 0.943232 |
Target: 5'- aGAGGCGUCCUccagcGGCCCAaagGGACcaACu -3' miRNA: 3'- gUUUUGCAGGA-----CCGGGU---CCUGucUGu -5' |
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13448 | 3' | -53.9 | NC_003409.1 | + | 7291 | 0.66 | 0.943232 |
Target: 5'- uGAGACauauagGUCC-GGCCCAGGuACGGGu- -3' miRNA: 3'- gUUUUG------CAGGaCCGGGUCC-UGUCUgu -5' |
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13448 | 3' | -53.9 | NC_003409.1 | + | 128255 | 0.66 | 0.943232 |
Target: 5'- aCGGGGCGUgaUGGCgCAGGugAGgGCAg -3' miRNA: 3'- -GUUUUGCAggACCGgGUCCugUC-UGU- -5' |
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13448 | 3' | -53.9 | NC_003409.1 | + | 8335 | 0.66 | 0.938456 |
Target: 5'- aGAGAUGaUCUGGCCCAGcAUAGAg- -3' miRNA: 3'- gUUUUGCaGGACCGGGUCcUGUCUgu -5' |
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13448 | 3' | -53.9 | NC_003409.1 | + | 123882 | 0.66 | 0.938456 |
Target: 5'- -uGGGCGacuggUCUGGUCCAgGGugGGGCAa -3' miRNA: 3'- guUUUGCa----GGACCGGGU-CCugUCUGU- -5' |
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13448 | 3' | -53.9 | NC_003409.1 | + | 77269 | 0.66 | 0.93343 |
Target: 5'- ---cGCGUaCCUGacauggccgcGCCCAGGgGCAGACc -3' miRNA: 3'- guuuUGCA-GGAC----------CGGGUCC-UGUCUGu -5' |
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13448 | 3' | -53.9 | NC_003409.1 | + | 13889 | 0.66 | 0.930294 |
Target: 5'- -cGAGCGUCaaGGCCgCggccaagcuuauuucGGGGCAGGCGa -3' miRNA: 3'- guUUUGCAGgaCCGG-G---------------UCCUGUCUGU- -5' |
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13448 | 3' | -53.9 | NC_003409.1 | + | 7442 | 0.66 | 0.928153 |
Target: 5'- uUAGcuCGUUCUcaaagaGGCCCcGGACAGGCu -3' miRNA: 3'- -GUUuuGCAGGA------CCGGGuCCUGUCUGu -5' |
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13448 | 3' | -53.9 | NC_003409.1 | + | 110085 | 0.67 | 0.916843 |
Target: 5'- cCAGAGCGuUCCUGcGCCUGGccGAcCAGGCGc -3' miRNA: 3'- -GUUUUGC-AGGAC-CGGGUC--CU-GUCUGU- -5' |
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13448 | 3' | -53.9 | NC_003409.1 | + | 68311 | 0.67 | 0.898002 |
Target: 5'- gAAGACGUC---GUCUGGGGCAGACAu -3' miRNA: 3'- gUUUUGCAGgacCGGGUCCUGUCUGU- -5' |
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13448 | 3' | -53.9 | NC_003409.1 | + | 108940 | 0.68 | 0.891231 |
Target: 5'- -cAGACGcagCC-GGCuCCGGGACAGugGc -3' miRNA: 3'- guUUUGCa--GGaCCG-GGUCCUGUCugU- -5' |
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13448 | 3' | -53.9 | NC_003409.1 | + | 108318 | 0.68 | 0.88422 |
Target: 5'- aGGGACuGUCCUGGCUCGa-GCAGACc -3' miRNA: 3'- gUUUUG-CAGGACCGGGUccUGUCUGu -5' |
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13448 | 3' | -53.9 | NC_003409.1 | + | 88578 | 0.68 | 0.876974 |
Target: 5'- cCAAAACGUCCauacaccgucUGuCCCAcGACAGGCGa -3' miRNA: 3'- -GUUUUGCAGG----------ACcGGGUcCUGUCUGU- -5' |
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13448 | 3' | -53.9 | NC_003409.1 | + | 33289 | 0.68 | 0.861796 |
Target: 5'- gCAGGACGUCCaGGCCCucuucuguugccAGG-CGGAgGg -3' miRNA: 3'- -GUUUUGCAGGaCCGGG------------UCCuGUCUgU- -5' |
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13448 | 3' | -53.9 | NC_003409.1 | + | 21876 | 0.7 | 0.764368 |
Target: 5'- gGGAGCGUCCUGGCaUAGacCGGACAa -3' miRNA: 3'- gUUUUGCAGGACCGgGUCcuGUCUGU- -5' |
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13448 | 3' | -53.9 | NC_003409.1 | + | 130467 | 0.71 | 0.744678 |
Target: 5'- uGGAACG-CCaUGGCCCacgGGGACAugGACAg -3' miRNA: 3'- gUUUUGCaGG-ACCGGG---UCCUGU--CUGU- -5' |
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13448 | 3' | -53.9 | NC_003409.1 | + | 30270 | 0.71 | 0.724573 |
Target: 5'- gCAAAACGUCCUcGUCCAuuguGGACGGuCAc -3' miRNA: 3'- -GUUUUGCAGGAcCGGGU----CCUGUCuGU- -5' |
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13448 | 3' | -53.9 | NC_003409.1 | + | 106118 | 0.72 | 0.673017 |
Target: 5'- ---uGCGUCCUGGC--GGGcACAGACAa -3' miRNA: 3'- guuuUGCAGGACCGggUCC-UGUCUGU- -5' |
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13448 | 3' | -53.9 | NC_003409.1 | + | 113460 | 0.73 | 0.610077 |
Target: 5'- cCAAcAgGUgCCUGGCCCAGGA-GGGCAu -3' miRNA: 3'- -GUUuUgCA-GGACCGGGUCCUgUCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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