Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
13448 | 5' | -63.9 | NC_003409.1 | + | 84190 | 0.73 | 0.205243 |
Target: 5'- cGCCugacuCCGGCCCC-CUCU-UGCUGCCc -3' miRNA: 3'- -CGGu----GGCCGGGGuGGGGuACGACGGu -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 113773 | 0.74 | 0.161174 |
Target: 5'- gGCCguuggugggaaaACCGGCaCCACCCUGUGCgGCCGa -3' miRNA: 3'- -CGG------------UGGCCGgGGUGGGGUACGaCGGU- -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 114559 | 0.78 | 0.092906 |
Target: 5'- gGCCuGCCaGCCCCACCCCGcUGUcGCCAu -3' miRNA: 3'- -CGG-UGGcCGGGGUGGGGU-ACGaCGGU- -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 133605 | 0.78 | 0.090565 |
Target: 5'- uGCCaccgaACCGGCCCUgggACCCCGUGCgcacaGCCGa -3' miRNA: 3'- -CGG-----UGGCCGGGG---UGGGGUACGa----CGGU- -5' |
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13448 | 5' | -63.9 | NC_003409.1 | + | 115438 | 1.09 | 0.000448 |
Target: 5'- gGCCACCGGCCCCACCCCAUGCUGCCAg -3' miRNA: 3'- -CGGUGGCCGGGGUGGGGUACGACGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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