miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1345 5' -62.5 NC_001335.1 + 185 0.66 0.35105
Target:  5'- aCGCCACUccugaCGGGUGGCUGUcaaGGauaCUCa -3'
miRNA:   3'- aGCGGUGG-----GCUCGCCGACG---UCg--GAGg -5'
1345 5' -62.5 NC_001335.1 + 331 0.68 0.233698
Target:  5'- gCGCCGCCUGuGCGGCgcucuauagagagggGCucuuAGCC-CCu -3'
miRNA:   3'- aGCGGUGGGCuCGCCGa--------------CG----UCGGaGG- -5'
1345 5' -62.5 NC_001335.1 + 829 0.68 0.239018
Target:  5'- gCGCCACaCC-AGCGGgaGCGGUagacgUUCCa -3'
miRNA:   3'- aGCGGUG-GGcUCGCCgaCGUCG-----GAGG- -5'
1345 5' -62.5 NC_001335.1 + 1148 0.68 0.263897
Target:  5'- -aGCC-CCCGgaucgGGCGGCguagGCGGCgUCg -3'
miRNA:   3'- agCGGuGGGC-----UCGCCGa---CGUCGgAGg -5'
1345 5' -62.5 NC_001335.1 + 1220 0.73 0.106108
Target:  5'- aCGCCGCCCGAuccgGgGGCUccaGC-GCCUCUg -3'
miRNA:   3'- aGCGGUGGGCU----CgCCGA---CGuCGGAGG- -5'
1345 5' -62.5 NC_001335.1 + 1270 0.66 0.34306
Target:  5'- -aGCCGgCgGcGGUGGCaGCAGCC-CCa -3'
miRNA:   3'- agCGGUgGgC-UCGCCGaCGUCGGaGG- -5'
1345 5' -62.5 NC_001335.1 + 3103 0.68 0.263897
Target:  5'- cUCGCCAaggCGAGCGGCgGgAGCUgauggUCCc -3'
miRNA:   3'- -AGCGGUgg-GCUCGCCGaCgUCGG-----AGG- -5'
1345 5' -62.5 NC_001335.1 + 5604 0.68 0.257486
Target:  5'- gCGCCGgCCGuAGCGGCaggcaccguacGCAGCCagCg -3'
miRNA:   3'- aGCGGUgGGC-UCGCCGa----------CGUCGGagG- -5'
1345 5' -62.5 NC_001335.1 + 6526 0.7 0.184858
Target:  5'- uUCGCCaagucgacccaagGCCCGAGCuGGCcGCAuuuguacaaccGCUUCCc -3'
miRNA:   3'- -AGCGG-------------UGGGCUCG-CCGaCGU-----------CGGAGG- -5'
1345 5' -62.5 NC_001335.1 + 6983 0.67 0.283905
Target:  5'- gCGCCugCUuGGCGGaacuCUGUGGCC-CCg -3'
miRNA:   3'- aGCGGugGGcUCGCC----GACGUCGGaGG- -5'
1345 5' -62.5 NC_001335.1 + 9767 0.66 0.359172
Target:  5'- aCGCCgACCCGA-CGGUccCAGgCUCCc -3'
miRNA:   3'- aGCGG-UGGGCUcGCCGacGUCgGAGG- -5'
1345 5' -62.5 NC_001335.1 + 10471 0.66 0.359172
Target:  5'- cUCGUCAUCgagguUGAGCc-CUGCGGCUUCCg -3'
miRNA:   3'- -AGCGGUGG-----GCUCGccGACGUCGGAGG- -5'
1345 5' -62.5 NC_001335.1 + 10980 1.11 0.000136
Target:  5'- uUCGCCACCCGAGCGGCUGCAGCCUCCu -3'
miRNA:   3'- -AGCGGUGGGCUCGCCGACGUCGGAGG- -5'
1345 5' -62.5 NC_001335.1 + 12457 0.7 0.195146
Target:  5'- aUCGCCACU--GGCGGCUggaaGguGCC-CCg -3'
miRNA:   3'- -AGCGGUGGgcUCGCCGA----CguCGGaGG- -5'
1345 5' -62.5 NC_001335.1 + 13858 0.72 0.12953
Target:  5'- gUGCCGCCgauGGCGGCUcgggugaggauguaaGUGGCCUCCg -3'
miRNA:   3'- aGCGGUGGgc-UCGCCGA---------------CGUCGGAGG- -5'
1345 5' -62.5 NC_001335.1 + 16144 0.69 0.200219
Target:  5'- aUCGCCuagaucUCCGAGCccccGGCUGCcgccgaggAGaCCUCCg -3'
miRNA:   3'- -AGCGGu-----GGGCUCG----CCGACG--------UC-GGAGG- -5'
1345 5' -62.5 NC_001335.1 + 18052 0.67 0.283219
Target:  5'- -gGCCggcgaagACCCGu-UGGUgaagGCAGCCUCCg -3'
miRNA:   3'- agCGG-------UGGGCucGCCGa---CGUCGGAGG- -5'
1345 5' -62.5 NC_001335.1 + 19160 0.68 0.257486
Target:  5'- cUCGCCGuagaucaacCCCGgcgucuugagccGGCGGUUGCGGaaCUCCu -3'
miRNA:   3'- -AGCGGU---------GGGC------------UCGCCGACGUCg-GAGG- -5'
1345 5' -62.5 NC_001335.1 + 20209 0.66 0.359172
Target:  5'- -aGCCGuCCCgGAGCGGgaucuuCUGCAGCagguCUUCg -3'
miRNA:   3'- agCGGU-GGG-CUCGCC------GACGUCG----GAGG- -5'
1345 5' -62.5 NC_001335.1 + 20577 0.75 0.080732
Target:  5'- cCGCCucugggcggucuGCUCGAuGCGGUguUGCAGCCUCUg -3'
miRNA:   3'- aGCGG------------UGGGCU-CGCCG--ACGUCGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.