miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1345 5' -62.5 NC_001335.1 + 20209 0.66 0.359172
Target:  5'- -aGCCGuCCCgGAGCGGgaucuuCUGCAGCagguCUUCg -3'
miRNA:   3'- agCGGU-GGG-CUCGCC------GACGUCG----GAGG- -5'
1345 5' -62.5 NC_001335.1 + 22470 0.66 0.35105
Target:  5'- -aGCUGCauuCGAggcuGCGGuCUGCAGCCacUCCa -3'
miRNA:   3'- agCGGUGg--GCU----CGCC-GACGUCGG--AGG- -5'
1345 5' -62.5 NC_001335.1 + 32688 0.66 0.34306
Target:  5'- gCGCCGgCCaacGGCGGCgGCGGUggCCa -3'
miRNA:   3'- aGCGGUgGGc--UCGCCGaCGUCGgaGG- -5'
1345 5' -62.5 NC_001335.1 + 19160 0.68 0.257486
Target:  5'- cUCGCCGuagaucaacCCCGgcgucuugagccGGCGGUUGCGGaaCUCCu -3'
miRNA:   3'- -AGCGGU---------GGGC------------UCGCCGACGUCg-GAGG- -5'
1345 5' -62.5 NC_001335.1 + 829 0.68 0.239018
Target:  5'- gCGCCACaCC-AGCGGgaGCGGUagacgUUCCa -3'
miRNA:   3'- aGCGGUG-GGcUCGCCgaCGUCG-----GAGG- -5'
1345 5' -62.5 NC_001335.1 + 331 0.68 0.233698
Target:  5'- gCGCCGCCUGuGCGGCgcucuauagagagggGCucuuAGCC-CCu -3'
miRNA:   3'- aGCGGUGGGCuCGCCGa--------------CG----UCGGaGG- -5'
1345 5' -62.5 NC_001335.1 + 16144 0.69 0.200219
Target:  5'- aUCGCCuagaucUCCGAGCccccGGCUGCcgccgaggAGaCCUCCg -3'
miRNA:   3'- -AGCGGu-----GGGCUCG----CCGACG--------UC-GGAGG- -5'
1345 5' -62.5 NC_001335.1 + 13858 0.72 0.12953
Target:  5'- gUGCCGCCgauGGCGGCUcgggugaggauguaaGUGGCCUCCg -3'
miRNA:   3'- aGCGGUGGgc-UCGCCGA---------------CGUCGGAGG- -5'
1345 5' -62.5 NC_001335.1 + 1220 0.73 0.106108
Target:  5'- aCGCCGCCCGAuccgGgGGCUccaGC-GCCUCUg -3'
miRNA:   3'- aGCGGUGGGCU----CgCCGA---CGuCGGAGG- -5'
1345 5' -62.5 NC_001335.1 + 10980 1.11 0.000136
Target:  5'- uUCGCCACCCGAGCGGCUGCAGCCUCCu -3'
miRNA:   3'- -AGCGGUGGGCUCGCCGACGUCGGAGG- -5'
1345 5' -62.5 NC_001335.1 + 10471 0.66 0.359172
Target:  5'- cUCGUCAUCgagguUGAGCc-CUGCGGCUUCCg -3'
miRNA:   3'- -AGCGGUGG-----GCUCGccGACGUCGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.