miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13451 3' -51.5 NC_003409.1 + 111597 0.66 0.984531
Target:  5'- cCCGCc--GGAUUCCAuCCGUggUGCCCAu -3'
miRNA:   3'- -GGUGucuUUUAGGGU-GGCA--ACGGGUu -5'
13451 3' -51.5 NC_003409.1 + 79920 0.66 0.984531
Target:  5'- aCCACAGAGAcaguuUCUCACC--UGUCUAGa -3'
miRNA:   3'- -GGUGUCUUUu----AGGGUGGcaACGGGUU- -5'
13451 3' -51.5 NC_003409.1 + 116411 0.66 0.982566
Target:  5'- cCUGCGGucGGUCCCGcCCGggGCgCGAa -3'
miRNA:   3'- -GGUGUCuuUUAGGGU-GGCaaCGgGUU- -5'
13451 3' -51.5 NC_003409.1 + 114438 0.66 0.978079
Target:  5'- cCCGCAGucAAUCaggGCCG-UGCCCGc -3'
miRNA:   3'- -GGUGUCuuUUAGgg-UGGCaACGGGUu -5'
13451 3' -51.5 NC_003409.1 + 54567 0.66 0.978079
Target:  5'- aCACGGcaccAUCCCGCCac-GCCCAc -3'
miRNA:   3'- gGUGUCuuu-UAGGGUGGcaaCGGGUu -5'
13451 3' -51.5 NC_003409.1 + 112182 0.66 0.978079
Target:  5'- aCGCGGGGAcgUUCACCGU-GCCUu- -3'
miRNA:   3'- gGUGUCUUUuaGGGUGGCAaCGGGuu -5'
13451 3' -51.5 NC_003409.1 + 29952 0.67 0.972792
Target:  5'- aCACAuuugc-CCCACCGUcgccUGCCCGGa -3'
miRNA:   3'- gGUGUcuuuuaGGGUGGCA----ACGGGUU- -5'
13451 3' -51.5 NC_003409.1 + 112106 0.67 0.96952
Target:  5'- uCUGCAGAuGAUCCCGCCuUUGaauuccaCCCAu -3'
miRNA:   3'- -GGUGUCUuUUAGGGUGGcAAC-------GGGUu -5'
13451 3' -51.5 NC_003409.1 + 66802 0.67 0.966641
Target:  5'- gCGCAGAAAGaugCCCuCCauaGUUGUCCAGg -3'
miRNA:   3'- gGUGUCUUUUa--GGGuGG---CAACGGGUU- -5'
13451 3' -51.5 NC_003409.1 + 34736 0.67 0.963223
Target:  5'- gCC-CAGAAucuUCCCGCCucUGUCCAu -3'
miRNA:   3'- -GGuGUCUUuu-AGGGUGGcaACGGGUu -5'
13451 3' -51.5 NC_003409.1 + 107966 0.67 0.959568
Target:  5'- uCCAgGGGcgugCCCACCGUgGCCUg- -3'
miRNA:   3'- -GGUgUCUuuuaGGGUGGCAaCGGGuu -5'
13451 3' -51.5 NC_003409.1 + 75847 0.68 0.95567
Target:  5'- cCCACAGAuucgcacagAAAUCCCugUGgcGCUCc- -3'
miRNA:   3'- -GGUGUCU---------UUUAGGGugGCaaCGGGuu -5'
13451 3' -51.5 NC_003409.1 + 12973 0.68 0.951525
Target:  5'- aCACAGuAGuuUCCCACCuUUGCgCGAc -3'
miRNA:   3'- gGUGUC-UUuuAGGGUGGcAACGgGUU- -5'
13451 3' -51.5 NC_003409.1 + 82272 0.68 0.951525
Target:  5'- gCC-CAGGGAAUCCCACCcccccuggGCCgCAu -3'
miRNA:   3'- -GGuGUCUUUUAGGGUGGcaa-----CGG-GUu -5'
13451 3' -51.5 NC_003409.1 + 57021 0.68 0.942475
Target:  5'- aCCugGGAcuAGAUUgCACCGgcaaaGCCCAGg -3'
miRNA:   3'- -GGugUCU--UUUAGgGUGGCaa---CGGGUU- -5'
13451 3' -51.5 NC_003409.1 + 87771 0.69 0.926961
Target:  5'- cCCcCAGuuGGAUUCCGCCGcacGCCCAAg -3'
miRNA:   3'- -GGuGUCu-UUUAGGGUGGCaa-CGGGUU- -5'
13451 3' -51.5 NC_003409.1 + 69284 0.7 0.88677
Target:  5'- cCCACAGGAcaagcugaugugguGGUCCCACUGcUGCgauCCAGa -3'
miRNA:   3'- -GGUGUCUU--------------UUAGGGUGGCaACG---GGUU- -5'
13451 3' -51.5 NC_003409.1 + 57769 0.7 0.874213
Target:  5'- cUCGCAGGGcGUCCCACaCGggGUUCAGa -3'
miRNA:   3'- -GGUGUCUUuUAGGGUG-GCaaCGGGUU- -5'
13451 3' -51.5 NC_003409.1 + 111797 0.71 0.842024
Target:  5'- uCCACGGuu-GUCCaAUCGUUGCCUAu -3'
miRNA:   3'- -GGUGUCuuuUAGGgUGGCAACGGGUu -5'
13451 3' -51.5 NC_003409.1 + 21225 0.72 0.815667
Target:  5'- cUCACAGu---UCCCACgGUgacGCCCAAa -3'
miRNA:   3'- -GGUGUCuuuuAGGGUGgCAa--CGGGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.