Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13451 | 3' | -51.5 | NC_003409.1 | + | 54567 | 0.66 | 0.978079 |
Target: 5'- aCACGGcaccAUCCCGCCac-GCCCAc -3' miRNA: 3'- gGUGUCuuu-UAGGGUGGcaaCGGGUu -5' |
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13451 | 3' | -51.5 | NC_003409.1 | + | 57769 | 0.7 | 0.874213 |
Target: 5'- cUCGCAGGGcGUCCCACaCGggGUUCAGa -3' miRNA: 3'- -GGUGUCUUuUAGGGUG-GCaaCGGGUU- -5' |
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13451 | 3' | -51.5 | NC_003409.1 | + | 69284 | 0.7 | 0.88677 |
Target: 5'- cCCACAGGAcaagcugaugugguGGUCCCACUGcUGCgauCCAGa -3' miRNA: 3'- -GGUGUCUU--------------UUAGGGUGGCaACG---GGUU- -5' |
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13451 | 3' | -51.5 | NC_003409.1 | + | 87771 | 0.69 | 0.926961 |
Target: 5'- cCCcCAGuuGGAUUCCGCCGcacGCCCAAg -3' miRNA: 3'- -GGuGUCu-UUUAGGGUGGCaa-CGGGUU- -5' |
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13451 | 3' | -51.5 | NC_003409.1 | + | 12973 | 0.68 | 0.951525 |
Target: 5'- aCACAGuAGuuUCCCACCuUUGCgCGAc -3' miRNA: 3'- gGUGUC-UUuuAGGGUGGcAACGgGUU- -5' |
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13451 | 3' | -51.5 | NC_003409.1 | + | 107966 | 0.67 | 0.959568 |
Target: 5'- uCCAgGGGcgugCCCACCGUgGCCUg- -3' miRNA: 3'- -GGUgUCUuuuaGGGUGGCAaCGGGuu -5' |
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13451 | 3' | -51.5 | NC_003409.1 | + | 112182 | 0.66 | 0.978079 |
Target: 5'- aCGCGGGGAcgUUCACCGU-GCCUu- -3' miRNA: 3'- gGUGUCUUUuaGGGUGGCAaCGGGuu -5' |
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13451 | 3' | -51.5 | NC_003409.1 | + | 79920 | 0.66 | 0.984531 |
Target: 5'- aCCACAGAGAcaguuUCUCACC--UGUCUAGa -3' miRNA: 3'- -GGUGUCUUUu----AGGGUGGcaACGGGUU- -5' |
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13451 | 3' | -51.5 | NC_003409.1 | + | 116411 | 0.66 | 0.982566 |
Target: 5'- cCUGCGGucGGUCCCGcCCGggGCgCGAa -3' miRNA: 3'- -GGUGUCuuUUAGGGU-GGCaaCGgGUU- -5' |
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13451 | 3' | -51.5 | NC_003409.1 | + | 114438 | 0.66 | 0.978079 |
Target: 5'- cCCGCAGucAAUCaggGCCG-UGCCCGc -3' miRNA: 3'- -GGUGUCuuUUAGgg-UGGCaACGGGUu -5' |
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13451 | 3' | -51.5 | NC_003409.1 | + | 29952 | 0.67 | 0.972792 |
Target: 5'- aCACAuuugc-CCCACCGUcgccUGCCCGGa -3' miRNA: 3'- gGUGUcuuuuaGGGUGGCA----ACGGGUU- -5' |
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13451 | 3' | -51.5 | NC_003409.1 | + | 112106 | 0.67 | 0.96952 |
Target: 5'- uCUGCAGAuGAUCCCGCCuUUGaauuccaCCCAu -3' miRNA: 3'- -GGUGUCUuUUAGGGUGGcAAC-------GGGUu -5' |
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13451 | 3' | -51.5 | NC_003409.1 | + | 66802 | 0.67 | 0.966641 |
Target: 5'- gCGCAGAAAGaugCCCuCCauaGUUGUCCAGg -3' miRNA: 3'- gGUGUCUUUUa--GGGuGG---CAACGGGUU- -5' |
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13451 | 3' | -51.5 | NC_003409.1 | + | 34736 | 0.67 | 0.963223 |
Target: 5'- gCC-CAGAAucuUCCCGCCucUGUCCAu -3' miRNA: 3'- -GGuGUCUUuu-AGGGUGGcaACGGGUu -5' |
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13451 | 3' | -51.5 | NC_003409.1 | + | 75847 | 0.68 | 0.95567 |
Target: 5'- cCCACAGAuucgcacagAAAUCCCugUGgcGCUCc- -3' miRNA: 3'- -GGUGUCU---------UUUAGGGugGCaaCGGGuu -5' |
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13451 | 3' | -51.5 | NC_003409.1 | + | 82272 | 0.68 | 0.951525 |
Target: 5'- gCC-CAGGGAAUCCCACCcccccuggGCCgCAu -3' miRNA: 3'- -GGuGUCUUUUAGGGUGGcaa-----CGG-GUu -5' |
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13451 | 3' | -51.5 | NC_003409.1 | + | 57021 | 0.68 | 0.942475 |
Target: 5'- aCCugGGAcuAGAUUgCACCGgcaaaGCCCAGg -3' miRNA: 3'- -GGugUCU--UUUAGgGUGGCaa---CGGGUU- -5' |
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13451 | 3' | -51.5 | NC_003409.1 | + | 111797 | 0.71 | 0.842024 |
Target: 5'- uCCACGGuu-GUCCaAUCGUUGCCUAu -3' miRNA: 3'- -GGUGUCuuuUAGGgUGGCAACGGGUu -5' |
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13451 | 3' | -51.5 | NC_003409.1 | + | 21225 | 0.72 | 0.815667 |
Target: 5'- cUCACAGu---UCCCACgGUgacGCCCAAa -3' miRNA: 3'- -GGUGUCuuuuAGGGUGgCAa--CGGGUU- -5' |
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13451 | 3' | -51.5 | NC_003409.1 | + | 116688 | 1.08 | 0.006878 |
Target: 5'- uCCACAGAAAAUCCCACCGUUGCCCAAg -3' miRNA: 3'- -GGUGUCUUUUAGGGUGGCAACGGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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