Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13451 | 5' | -54.8 | NC_003409.1 | + | 20182 | 0.66 | 0.907515 |
Target: 5'- -gUCAGA--GUGGUGGGCGucaagGCGg- -3' miRNA: 3'- ggAGUCUguUACCACCCGCua---CGCga -5' |
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13451 | 5' | -54.8 | NC_003409.1 | + | 30964 | 0.66 | 0.919468 |
Target: 5'- gCUggAGGCGggGGUGGGUucagcggguGGUGCGCc -3' miRNA: 3'- -GGagUCUGUuaCCACCCG---------CUACGCGa -5' |
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13451 | 5' | -54.8 | NC_003409.1 | + | 52163 | 0.66 | 0.930439 |
Target: 5'- gCUCAGucGCAcgGG-GGGUGGccuguggcgugUGCGCg -3' miRNA: 3'- gGAGUC--UGUuaCCaCCCGCU-----------ACGCGa -5' |
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13451 | 5' | -54.8 | NC_003409.1 | + | 54874 | 0.68 | 0.850293 |
Target: 5'- uCCUCGGGCAG-GGUuucGGGCGgcGgGUg -3' miRNA: 3'- -GGAGUCUGUUaCCA---CCCGCuaCgCGa -5' |
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13451 | 5' | -54.8 | NC_003409.1 | + | 67683 | 0.73 | 0.586505 |
Target: 5'- uCCUCGGACGAggguggcUGGUGGGaaaaaugGCGCg -3' miRNA: 3'- -GGAGUCUGUU-------ACCACCCgcua---CGCGa -5' |
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13451 | 5' | -54.8 | NC_003409.1 | + | 67793 | 0.69 | 0.780166 |
Target: 5'- -gUC-GACGAUcgcGGUGGGUGcgGCGCg -3' miRNA: 3'- ggAGuCUGUUA---CCACCCGCuaCGCGa -5' |
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13451 | 5' | -54.8 | NC_003409.1 | + | 75381 | 0.66 | 0.907515 |
Target: 5'- aCUaCAGACGcaGGcacgGGGCGAccUGCGCc -3' miRNA: 3'- gGA-GUCUGUuaCCa---CCCGCU--ACGCGa -5' |
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13451 | 5' | -54.8 | NC_003409.1 | + | 87158 | 0.72 | 0.629006 |
Target: 5'- aCCUCuGg----GGUGGGUGGUGCGCc -3' miRNA: 3'- -GGAGuCuguuaCCACCCGCUACGCGa -5' |
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13451 | 5' | -54.8 | NC_003409.1 | + | 116723 | 1.09 | 0.003288 |
Target: 5'- gCCUCAGACAAUGGUGGGCGAUGCGCUc -3' miRNA: 3'- -GGAGUCUGUUACCACCCGCUACGCGA- -5' |
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13451 | 5' | -54.8 | NC_003409.1 | + | 116853 | 0.68 | 0.84216 |
Target: 5'- gCCUUGGGCAAcGGUGGGauuuucugugGAUGgGCa -3' miRNA: 3'- -GGAGUCUGUUaCCACCCg---------CUACgCGa -5' |
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13451 | 5' | -54.8 | NC_003409.1 | + | 119799 | 0.66 | 0.913614 |
Target: 5'- --cCAGGCGccgGcGUGGGCGccGCGCg -3' miRNA: 3'- ggaGUCUGUua-C-CACCCGCuaCGCGa -5' |
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13451 | 5' | -54.8 | NC_003409.1 | + | 134484 | 0.69 | 0.780166 |
Target: 5'- aCUaCAGAgGGUGuccccggGGGCGGUGCGCc -3' miRNA: 3'- gGA-GUCUgUUACca-----CCCGCUACGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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