Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13452 | 3' | -55.6 | NC_003409.1 | + | 118499 | 0.66 | 0.901222 |
Target: 5'- cGCCgGGGUACUGCAGGguUcGCAGg- -3' miRNA: 3'- -UGGgCCUGUGGCGUUCguAaCGUCac -5' |
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13452 | 3' | -55.6 | NC_003409.1 | + | 109837 | 0.73 | 0.534878 |
Target: 5'- cGCCCaaGACGCCGCG-GCGggagGCGGUGg -3' miRNA: 3'- -UGGGc-CUGUGGCGUuCGUaa--CGUCAC- -5' |
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13452 | 3' | -55.6 | NC_003409.1 | + | 15833 | 0.71 | 0.617306 |
Target: 5'- aGCUCGGGCGCgGCGAGCccgUGUGGg- -3' miRNA: 3'- -UGGGCCUGUGgCGUUCGua-ACGUCac -5' |
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13452 | 3' | -55.6 | NC_003409.1 | + | 109124 | 0.68 | 0.789016 |
Target: 5'- uGCCCGGaACACCGCAgauccgaaggGGCGUggagGCu--- -3' miRNA: 3'- -UGGGCC-UGUGGCGU----------UCGUAa---CGucac -5' |
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13452 | 3' | -55.6 | NC_003409.1 | + | 78233 | 0.68 | 0.798257 |
Target: 5'- --gUGGGgACCGCGAGgAUUGCAGcUGa -3' miRNA: 3'- uggGCCUgUGGCGUUCgUAACGUC-AC- -5' |
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13452 | 3' | -55.6 | NC_003409.1 | + | 133684 | 0.67 | 0.81626 |
Target: 5'- cCCCGGuugaagccuGCACCGCcAGCGguaGCAGg- -3' miRNA: 3'- uGGGCC---------UGUGGCGuUCGUaa-CGUCac -5' |
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13452 | 3' | -55.6 | NC_003409.1 | + | 132949 | 0.67 | 0.81626 |
Target: 5'- cAUCCGGACcgGCCGCGGGauccGCAGg- -3' miRNA: 3'- -UGGGCCUG--UGGCGUUCguaaCGUCac -5' |
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13452 | 3' | -55.6 | NC_003409.1 | + | 95063 | 0.66 | 0.880684 |
Target: 5'- cGCCUGauACACCGC---CGUUGCGGUGg -3' miRNA: 3'- -UGGGCc-UGUGGCGuucGUAACGUCAC- -5' |
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13452 | 3' | -55.6 | NC_003409.1 | + | 87386 | 0.66 | 0.887766 |
Target: 5'- uACCCGGGCG-CGgGGGCGcuggGCGGUu -3' miRNA: 3'- -UGGGCCUGUgGCgUUCGUaa--CGUCAc -5' |
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13452 | 3' | -55.6 | NC_003409.1 | + | 127779 | 0.73 | 0.534878 |
Target: 5'- uCCCGGGCGCCGCGuAGUGgaggGCGGa- -3' miRNA: 3'- uGGGCCUGUGGCGU-UCGUaa--CGUCac -5' |
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13452 | 3' | -55.6 | NC_003409.1 | + | 27655 | 0.73 | 0.495065 |
Target: 5'- cGCCCGGAaACCGCAuGCGUUcCAGUc -3' miRNA: 3'- -UGGGCCUgUGGCGUuCGUAAcGUCAc -5' |
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13452 | 3' | -55.6 | NC_003409.1 | + | 64748 | 0.75 | 0.428921 |
Target: 5'- cACCCGGGuuUCGCAGGC--UGCAGUGu -3' miRNA: 3'- -UGGGCCUguGGCGUUCGuaACGUCAC- -5' |
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13452 | 3' | -55.6 | NC_003409.1 | + | 6532 | 0.66 | 0.894613 |
Target: 5'- cCCCGGGCGuCC-CAAGCc-UGaCAGUGg -3' miRNA: 3'- uGGGCCUGU-GGcGUUCGuaAC-GUCAC- -5' |
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13452 | 3' | -55.6 | NC_003409.1 | + | 117104 | 1.07 | 0.00329 |
Target: 5'- cACCCGGACACCGCAAGCAUUGCAGUGc -3' miRNA: 3'- -UGGGCCUGUGGCGUUCGUAACGUCAC- -5' |
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13452 | 3' | -55.6 | NC_003409.1 | + | 115655 | 0.77 | 0.313784 |
Target: 5'- gGCCCGGGCuaguuccgguauGCCGCucGCGggUGCGGUGg -3' miRNA: 3'- -UGGGCCUG------------UGGCGuuCGUa-ACGUCAC- -5' |
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13452 | 3' | -55.6 | NC_003409.1 | + | 13563 | 0.74 | 0.475666 |
Target: 5'- cGCCCGuGAaGCCGUAaacGGCGUUGCAGg- -3' miRNA: 3'- -UGGGC-CUgUGGCGU---UCGUAACGUCac -5' |
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13452 | 3' | -55.6 | NC_003409.1 | + | 133094 | 0.72 | 0.586103 |
Target: 5'- gUCCGGAUGCCGUgaAGGCg--GCGGUGg -3' miRNA: 3'- uGGGCCUGUGGCG--UUCGuaaCGUCAC- -5' |
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13452 | 3' | -55.6 | NC_003409.1 | + | 90485 | 0.67 | 0.85808 |
Target: 5'- aGCCCGGAgGCgacacggaUGCAAGCGgcGUGGUa -3' miRNA: 3'- -UGGGCCUgUG--------GCGUUCGUaaCGUCAc -5' |
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13452 | 3' | -55.6 | NC_003409.1 | + | 110115 | 0.66 | 0.86507 |
Target: 5'- aACCCGGACACCgGCAucuugccAGCGccGcCAGa- -3' miRNA: 3'- -UGGGCCUGUGG-CGU-------UCGUaaC-GUCac -5' |
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13452 | 3' | -55.6 | NC_003409.1 | + | 105214 | 0.66 | 0.894613 |
Target: 5'- cGCCUGGGguCGCCGgGGGaguggGCGGUGg -3' miRNA: 3'- -UGGGCCU--GUGGCgUUCguaa-CGUCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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