Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 13454 | 3' | -50.8 | NC_003409.1 | + | 95559 | 0.66 | 0.968166 |
|
Target: 5'- cGCCGCU-GGGGGG-CAGCu--- -3' miRNA: 3'- -CGGUGAgCCCCCCuGUUGugau -5' |
|||||||
| 13454 | 3' | -50.8 | NC_003409.1 | + | 34441 | 0.66 | 0.964721 |
|
Target: 5'- gGCCug-CGGGGGGGauguCACUAa -3' miRNA: 3'- -CGGugaGCCCCCCUguu-GUGAU- -5' |
|||||||
| 13454 | 3' | -50.8 | NC_003409.1 | + | 66842 | 0.66 | 0.964363 |
|
Target: 5'- uGCCACUagaccguggagccCGGGGGaaGugGACACa- -3' miRNA: 3'- -CGGUGA-------------GCCCCC--CugUUGUGau -5' |
|||||||
| 13454 | 3' | -50.8 | NC_003409.1 | + | 25906 | 0.67 | 0.943578 |
|
Target: 5'- --gACUUaGGGGGACAGCGCg- -3' miRNA: 3'- cggUGAGcCCCCCUGUUGUGau -5' |
|||||||
| 13454 | 3' | -50.8 | NC_003409.1 | + | 52159 | 0.67 | 0.942093 |
|
Target: 5'- aGUCGCaCGGGGGGugGccuguggcgugugcGCGCUGg -3' miRNA: 3'- -CGGUGaGCCCCCCugU--------------UGUGAU- -5' |
|||||||
| 13454 | 3' | -50.8 | NC_003409.1 | + | 127711 | 0.68 | 0.921697 |
|
Target: 5'- uGCUGCUCuuGGGGACGugACUGc -3' miRNA: 3'- -CGGUGAGccCCCCUGUugUGAU- -5' |
|||||||
| 13454 | 3' | -50.8 | NC_003409.1 | + | 88387 | 0.72 | 0.771786 |
|
Target: 5'- -gCAUUgGGGGGGACAacagACACUGa -3' miRNA: 3'- cgGUGAgCCCCCCUGU----UGUGAU- -5' |
|||||||
| 13454 | 3' | -50.8 | NC_003409.1 | + | 70884 | 0.72 | 0.751102 |
|
Target: 5'- --aGCUUGGGGGGGCAgagaugGCGCUAc -3' miRNA: 3'- cggUGAGCCCCCCUGU------UGUGAU- -5' |
|||||||
| 13454 | 3' | -50.8 | NC_003409.1 | + | 19292 | 0.73 | 0.708343 |
|
Target: 5'- cGCCACgUGGGGcGGGCAuACGCUGc -3' miRNA: 3'- -CGGUGaGCCCC-CCUGU-UGUGAU- -5' |
|||||||
| 13454 | 3' | -50.8 | NC_003409.1 | + | 117851 | 1.03 | 0.011255 |
|
Target: 5'- gGCCACUCGGGGGGACAACACUAa -3' miRNA: 3'- -CGGUGAGCCCCCCUGUUGUGAU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home