Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13455 | 5' | -58.4 | NC_003409.1 | + | 118798 | 1.1 | 0.001292 |
Target: 5'- aCCCAGAGGCGAGAUUCCAGGGCCGUGa -3' miRNA: 3'- -GGGUCUCCGCUCUAAGGUCCCGGCAC- -5' |
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13455 | 5' | -58.4 | NC_003409.1 | + | 24158 | 0.98 | 0.009276 |
Target: 5'- aCCCAGAGGCGAGAUUCCAGGcCCGUGa -3' miRNA: 3'- -GGGUCUCCGCUCUAAGGUCCcGGCAC- -5' |
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13455 | 5' | -58.4 | NC_003409.1 | + | 82435 | 0.79 | 0.182236 |
Target: 5'- gCCCAGgggGGGUGGGAUUCCcuGGGCCGa- -3' miRNA: 3'- -GGGUC---UCCGCUCUAAGGu-CCCGGCac -5' |
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13455 | 5' | -58.4 | NC_003409.1 | + | 35175 | 0.69 | 0.627473 |
Target: 5'- gUCCaAGGGGa-GGGUUCUGGGGCCGg- -3' miRNA: 3'- -GGG-UCUCCgcUCUAAGGUCCCGGCac -5' |
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13455 | 5' | -58.4 | NC_003409.1 | + | 12595 | 0.69 | 0.64765 |
Target: 5'- aCCCAGAGGCGG--UUCCgaugGGGGCa--- -3' miRNA: 3'- -GGGUCUCCGCUcuAAGG----UCCCGgcac -5' |
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13455 | 5' | -58.4 | NC_003409.1 | + | 87960 | 0.68 | 0.677805 |
Target: 5'- aCCAGAuGaGUGAGggUCUgaAGGGCCGg- -3' miRNA: 3'- gGGUCU-C-CGCUCuaAGG--UCCCGGCac -5' |
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13455 | 5' | -58.4 | NC_003409.1 | + | 128627 | 0.68 | 0.677805 |
Target: 5'- --aAGAGGCGuuGUUCCAGGGUgCGg- -3' miRNA: 3'- gggUCUCCGCucUAAGGUCCCG-GCac -5' |
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13455 | 5' | -58.4 | NC_003409.1 | + | 18801 | 0.68 | 0.687795 |
Target: 5'- gCCUGGGGGUGGcuauGGUUCCAuGGG-CGUGa -3' miRNA: 3'- -GGGUCUCCGCU----CUAAGGU-CCCgGCAC- -5' |
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13455 | 5' | -58.4 | NC_003409.1 | + | 34894 | 0.68 | 0.707632 |
Target: 5'- -aCAGAGGCGGGAagaUUCU-GGGCCc-- -3' miRNA: 3'- ggGUCUCCGCUCU---AAGGuCCCGGcac -5' |
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13455 | 5' | -58.4 | NC_003409.1 | + | 95594 | 0.67 | 0.717461 |
Target: 5'- cCUCAGAGGCGucc-UCCAGcGGCCc-- -3' miRNA: 3'- -GGGUCUCCGCucuaAGGUC-CCGGcac -5' |
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13455 | 5' | -58.4 | NC_003409.1 | + | 68811 | 0.67 | 0.736898 |
Target: 5'- aCUCGcGAuGGCcucGGUUCCAGGGCUGUa -3' miRNA: 3'- -GGGU-CU-CCGcu-CUAAGGUCCCGGCAc -5' |
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13455 | 5' | -58.4 | NC_003409.1 | + | 48720 | 0.67 | 0.755981 |
Target: 5'- --gGGuAGGCGAGGgcacgcUCCGGGGCUGa- -3' miRNA: 3'- gggUC-UCCGCUCUa-----AGGUCCCGGCac -5' |
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13455 | 5' | -58.4 | NC_003409.1 | + | 93690 | 0.67 | 0.765368 |
Target: 5'- gCCCAGAGGUaGGAUgguugauguaCuGGGCgGUGg -3' miRNA: 3'- -GGGUCUCCGcUCUAag--------GuCCCGgCAC- -5' |
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13455 | 5' | -58.4 | NC_003409.1 | + | 87304 | 0.67 | 0.765368 |
Target: 5'- cCCCAGAGGUGgcAGAgcgaCAGGaGCCa-- -3' miRNA: 3'- -GGGUCUCCGC--UCUaag-GUCC-CGGcac -5' |
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13455 | 5' | -58.4 | NC_003409.1 | + | 128523 | 0.66 | 0.774639 |
Target: 5'- gUCCAGuaGGGgGAGAUgucacuUCCAGgcaGGCUGUGc -3' miRNA: 3'- -GGGUC--UCCgCUCUA------AGGUC---CCGGCAC- -5' |
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13455 | 5' | -58.4 | NC_003409.1 | + | 30964 | 0.66 | 0.818968 |
Target: 5'- gCUGGAGGCGGGGgugggUUCAgcGGGUgGUGc -3' miRNA: 3'- gGGUCUCCGCUCUa----AGGU--CCCGgCAC- -5' |
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13455 | 5' | -58.4 | NC_003409.1 | + | 107983 | 0.66 | 0.818968 |
Target: 5'- aCUCuGuGGCaGGGAgcUCCAGGGgCGUGc -3' miRNA: 3'- -GGGuCuCCG-CUCUa-AGGUCCCgGCAC- -5' |
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13455 | 5' | -58.4 | NC_003409.1 | + | 74371 | 0.66 | 0.82235 |
Target: 5'- gUCCAGuGGCGGGGguaacgacaguagCgGGGGuuGUGc -3' miRNA: 3'- -GGGUCuCCGCUCUaa-----------GgUCCCggCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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