Results 41 - 54 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13457 | 3' | -42.5 | NC_003409.1 | + | 131466 | 0.67 | 0.999995 |
Target: 5'- cCUgGGCAGCCUaAGGGCCAUg- -3' miRNA: 3'- -GAgUUGUCGGGcUUUUGGUAgu -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 120379 | 0.67 | 0.999995 |
Target: 5'- gCUC-ACGGCCCGuguGCCAg-- -3' miRNA: 3'- -GAGuUGUCGGGCuuuUGGUagu -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 121186 | 0.66 | 1 |
Target: 5'- --aAAgGGUCCGAAAACCA-CAa -3' miRNA: 3'- gagUUgUCGGGCUUUUGGUaGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 22568 | 0.66 | 1 |
Target: 5'- -cCAGCGGUCCugccACCAUCAu -3' miRNA: 3'- gaGUUGUCGGGcuuuUGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 28873 | 0.66 | 0.999999 |
Target: 5'- aUCGGCGGCaccaaUGAAAACCAg-- -3' miRNA: 3'- gAGUUGUCGg----GCUUUUGGUagu -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 49432 | 0.66 | 0.999999 |
Target: 5'- aUCuACAGCCCccccauAGCCAUCc -3' miRNA: 3'- gAGuUGUCGGGcuu---UUGGUAGu -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 134497 | 0.66 | 0.999999 |
Target: 5'- uCUCGGCAGCCUGAcuACa---- -3' miRNA: 3'- -GAGUUGUCGGGCUuuUGguagu -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 11943 | 0.66 | 0.999999 |
Target: 5'- -gCAGCGcuGCCUGAAAACguUCAc -3' miRNA: 3'- gaGUUGU--CGGGCUUUUGguAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 87544 | 0.66 | 0.999999 |
Target: 5'- -cCAGCGcccccgcGCCCGGguaugcgAAACCAUCAu -3' miRNA: 3'- gaGUUGU-------CGGGCU-------UUUGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 84533 | 0.67 | 0.999998 |
Target: 5'- -aCGACGGCagagggucaGGAGGCCGUCAu -3' miRNA: 3'- gaGUUGUCGgg-------CUUUUGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 111733 | 0.67 | 0.999998 |
Target: 5'- gUUAGCAGUCCGggGuCCAc-- -3' miRNA: 3'- gAGUUGUCGGGCuuUuGGUagu -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 27216 | 0.67 | 0.999997 |
Target: 5'- -cCAACuGCUCGAGGcgacaacGCCAUCGu -3' miRNA: 3'- gaGUUGuCGGGCUUU-------UGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 76177 | 0.67 | 0.999996 |
Target: 5'- --aGACGGCCUcuAGGGCCGUCAu -3' miRNA: 3'- gagUUGUCGGGc-UUUUGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 129058 | 0.75 | 0.988978 |
Target: 5'- aCUCAAggaGGCCUGAAgGGCCAUCGg -3' miRNA: 3'- -GAGUUg--UCGGGCUU-UUGGUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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