Results 41 - 54 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13457 | 3' | -42.5 | NC_003409.1 | + | 34384 | 0.68 | 0.999992 |
Target: 5'- gUCAACGGagaagugagggucCCCGggGACgAUCGc -3' miRNA: 3'- gAGUUGUC-------------GGGCuuUUGgUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 110684 | 0.67 | 0.999995 |
Target: 5'- -aCAGCAGCC-GAAGAUUGUCGc -3' miRNA: 3'- gaGUUGUCGGgCUUUUGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 52552 | 0.66 | 1 |
Target: 5'- --aAACAGCCCGAugugcaaaAGACaGUCAg -3' miRNA: 3'- gagUUGUCGGGCU--------UUUGgUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 27415 | 0.66 | 1 |
Target: 5'- -gCAACAGUCUaaaGAAAACCGUa- -3' miRNA: 3'- gaGUUGUCGGG---CUUUUGGUAgu -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 21129 | 0.66 | 1 |
Target: 5'- cCUCAACucgcaguGCUCGGAGACCu--- -3' miRNA: 3'- -GAGUUGu------CGGGCUUUUGGuagu -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 95609 | 0.66 | 1 |
Target: 5'- -cCAGCGGCCCaaaGGGACCAa-- -3' miRNA: 3'- gaGUUGUCGGGc--UUUUGGUagu -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 90169 | 0.66 | 1 |
Target: 5'- -gCGGCAGUCC-AGcACCAUCAu -3' miRNA: 3'- gaGUUGUCGGGcUUuUGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 68646 | 0.66 | 0.999999 |
Target: 5'- ---uACAGCCCuGGAAccgagGCCAUCGc -3' miRNA: 3'- gaguUGUCGGG-CUUU-----UGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 51924 | 0.67 | 0.999998 |
Target: 5'- gCUCGA-GGCuCCGGGAACCGUg- -3' miRNA: 3'- -GAGUUgUCG-GGCUUUUGGUAgu -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 58661 | 0.67 | 0.999998 |
Target: 5'- cCUC-ACAGCCCGuagacguggacggGGAACCGcUCGa -3' miRNA: 3'- -GAGuUGUCGGGC-------------UUUUGGU-AGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 78292 | 0.67 | 0.999998 |
Target: 5'- ---cGCAGCCCGguAGCCG-CAu -3' miRNA: 3'- gaguUGUCGGGCuuUUGGUaGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 128806 | 0.67 | 0.999995 |
Target: 5'- aUgGACAcCCCGuGAACCGUCGu -3' miRNA: 3'- gAgUUGUcGGGCuUUUGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 80084 | 0.67 | 0.999995 |
Target: 5'- --aGACAGUCUGGAGacggagGCCAUCGa -3' miRNA: 3'- gagUUGUCGGGCUUU------UGGUAGU- -5' |
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13457 | 3' | -42.5 | NC_003409.1 | + | 120644 | 1.07 | 0.055217 |
Target: 5'- gCUCAACAGCCCGAAAACCAUCAg -3' miRNA: 3'- -GAGUUGUCGGGCUUUUGGUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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