Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13457 | 5' | -45.5 | NC_003409.1 | + | 117737 | 0.66 | 0.999788 |
Target: 5'- cUCGGUGGGggaGGGUGCc-CUGGu -3' miRNA: 3'- -GGCUACCUaa-UCCACGacGACC- -5' |
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13457 | 5' | -45.5 | NC_003409.1 | + | 69285 | 0.67 | 0.999704 |
Target: 5'- aCUGAUGGAUaGGGUGCcccuaaagaccgucUGUUGc -3' miRNA: 3'- -GGCUACCUAaUCCACG--------------ACGACc -5' |
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13457 | 5' | -45.5 | NC_003409.1 | + | 101242 | 0.67 | 0.999551 |
Target: 5'- gCCGGcgUGGAUaugaAGGUGCagGCUGa -3' miRNA: 3'- -GGCU--ACCUAa---UCCACGa-CGACc -5' |
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13457 | 5' | -45.5 | NC_003409.1 | + | 67345 | 0.67 | 0.999551 |
Target: 5'- -gGAUgcGGGUUGGGUcGCUGCaccUGGa -3' miRNA: 3'- ggCUA--CCUAAUCCA-CGACG---ACC- -5' |
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13457 | 5' | -45.5 | NC_003409.1 | + | 73567 | 0.68 | 0.999109 |
Target: 5'- cCCGAUGGGUUaaagGGGaUGaUGCUGa -3' miRNA: 3'- -GGCUACCUAA----UCC-ACgACGACc -5' |
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13457 | 5' | -45.5 | NC_003409.1 | + | 24649 | 0.68 | 0.998896 |
Target: 5'- gCCGG-GGcuccugGGGUGCUGCcGGg -3' miRNA: 3'- -GGCUaCCuaa---UCCACGACGaCC- -5' |
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13457 | 5' | -45.5 | NC_003409.1 | + | 24609 | 0.68 | 0.998896 |
Target: 5'- gCCGG-GGcuccugGGGUGCUGCcGGg -3' miRNA: 3'- -GGCUaCCuaa---UCCACGACGaCC- -5' |
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13457 | 5' | -45.5 | NC_003409.1 | + | 24569 | 0.68 | 0.998896 |
Target: 5'- gCCGG-GGcuccugGGGUGCUGCcGGg -3' miRNA: 3'- -GGCUaCCuaa---UCCACGACGaCC- -5' |
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13457 | 5' | -45.5 | NC_003409.1 | + | 24529 | 0.68 | 0.998896 |
Target: 5'- gCCGG-GGcuccugGGGUGCUGCcGGg -3' miRNA: 3'- -GGCUaCCuaa---UCCACGACGaCC- -5' |
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13457 | 5' | -45.5 | NC_003409.1 | + | 24489 | 0.68 | 0.998896 |
Target: 5'- gCCGG-GGcuccugGGGUGCUGCcGGg -3' miRNA: 3'- -GGCUaCCuaa---UCCACGACGaCC- -5' |
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13457 | 5' | -45.5 | NC_003409.1 | + | 24449 | 0.68 | 0.998896 |
Target: 5'- gCCGG-GGcuccugGGGUGCUGCcGGg -3' miRNA: 3'- -GGCUaCCuaa---UCCACGACGaCC- -5' |
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13457 | 5' | -45.5 | NC_003409.1 | + | 24689 | 0.68 | 0.998896 |
Target: 5'- gCCGG-GGcuccugGGGUGCUGCcGGg -3' miRNA: 3'- -GGCUaCCuaa---UCCACGACGaCC- -5' |
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13457 | 5' | -45.5 | NC_003409.1 | + | 24729 | 0.68 | 0.998896 |
Target: 5'- gCCGG-GGcuccugGGGUGCUGCcGGg -3' miRNA: 3'- -GGCUaCCuaa---UCCACGACGaCC- -5' |
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13457 | 5' | -45.5 | NC_003409.1 | + | 131398 | 0.68 | 0.99864 |
Target: 5'- gCCGuGUGGccgcguuGGUGCUGcCUGGg -3' miRNA: 3'- -GGC-UACCuaau---CCACGAC-GACC- -5' |
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13457 | 5' | -45.5 | NC_003409.1 | + | 88195 | 0.68 | 0.998337 |
Target: 5'- cCCGAUggcgccuuagggGGAgcAGGUGCUGCa-- -3' miRNA: 3'- -GGCUA------------CCUaaUCCACGACGacc -5' |
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13457 | 5' | -45.5 | NC_003409.1 | + | 73098 | 0.69 | 0.995827 |
Target: 5'- uCCGA-GGAUUAuGGcGCcGCUGGa -3' miRNA: 3'- -GGCUaCCUAAU-CCaCGaCGACC- -5' |
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13457 | 5' | -45.5 | NC_003409.1 | + | 121726 | 0.7 | 0.992089 |
Target: 5'- aCGA-GGGUUgcaggaaacAGGUGCUGCcGGg -3' miRNA: 3'- gGCUaCCUAA---------UCCACGACGaCC- -5' |
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13457 | 5' | -45.5 | NC_003409.1 | + | 23129 | 0.71 | 0.989414 |
Target: 5'- aCCGcaaGUGGAUUuGGUGCUGUUa- -3' miRNA: 3'- -GGC---UACCUAAuCCACGACGAcc -5' |
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13457 | 5' | -45.5 | NC_003409.1 | + | 116460 | 0.73 | 0.960556 |
Target: 5'- aUCGGUGGAUgGGGUGCgaagGCccgGGa -3' miRNA: 3'- -GGCUACCUAaUCCACGa---CGa--CC- -5' |
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13457 | 5' | -45.5 | NC_003409.1 | + | 27256 | 0.78 | 0.824113 |
Target: 5'- -gGAcGGGcggUGGGUGCUGCUGGa -3' miRNA: 3'- ggCUaCCUa--AUCCACGACGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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