miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13457 5' -45.5 NC_003409.1 + 117737 0.66 0.999788
Target:  5'- cUCGGUGGGggaGGGUGCc-CUGGu -3'
miRNA:   3'- -GGCUACCUaa-UCCACGacGACC- -5'
13457 5' -45.5 NC_003409.1 + 69285 0.67 0.999704
Target:  5'- aCUGAUGGAUaGGGUGCcccuaaagaccgucUGUUGc -3'
miRNA:   3'- -GGCUACCUAaUCCACG--------------ACGACc -5'
13457 5' -45.5 NC_003409.1 + 101242 0.67 0.999551
Target:  5'- gCCGGcgUGGAUaugaAGGUGCagGCUGa -3'
miRNA:   3'- -GGCU--ACCUAa---UCCACGa-CGACc -5'
13457 5' -45.5 NC_003409.1 + 67345 0.67 0.999551
Target:  5'- -gGAUgcGGGUUGGGUcGCUGCaccUGGa -3'
miRNA:   3'- ggCUA--CCUAAUCCA-CGACG---ACC- -5'
13457 5' -45.5 NC_003409.1 + 73567 0.68 0.999109
Target:  5'- cCCGAUGGGUUaaagGGGaUGaUGCUGa -3'
miRNA:   3'- -GGCUACCUAA----UCC-ACgACGACc -5'
13457 5' -45.5 NC_003409.1 + 24649 0.68 0.998896
Target:  5'- gCCGG-GGcuccugGGGUGCUGCcGGg -3'
miRNA:   3'- -GGCUaCCuaa---UCCACGACGaCC- -5'
13457 5' -45.5 NC_003409.1 + 24609 0.68 0.998896
Target:  5'- gCCGG-GGcuccugGGGUGCUGCcGGg -3'
miRNA:   3'- -GGCUaCCuaa---UCCACGACGaCC- -5'
13457 5' -45.5 NC_003409.1 + 24569 0.68 0.998896
Target:  5'- gCCGG-GGcuccugGGGUGCUGCcGGg -3'
miRNA:   3'- -GGCUaCCuaa---UCCACGACGaCC- -5'
13457 5' -45.5 NC_003409.1 + 24529 0.68 0.998896
Target:  5'- gCCGG-GGcuccugGGGUGCUGCcGGg -3'
miRNA:   3'- -GGCUaCCuaa---UCCACGACGaCC- -5'
13457 5' -45.5 NC_003409.1 + 24489 0.68 0.998896
Target:  5'- gCCGG-GGcuccugGGGUGCUGCcGGg -3'
miRNA:   3'- -GGCUaCCuaa---UCCACGACGaCC- -5'
13457 5' -45.5 NC_003409.1 + 24449 0.68 0.998896
Target:  5'- gCCGG-GGcuccugGGGUGCUGCcGGg -3'
miRNA:   3'- -GGCUaCCuaa---UCCACGACGaCC- -5'
13457 5' -45.5 NC_003409.1 + 24689 0.68 0.998896
Target:  5'- gCCGG-GGcuccugGGGUGCUGCcGGg -3'
miRNA:   3'- -GGCUaCCuaa---UCCACGACGaCC- -5'
13457 5' -45.5 NC_003409.1 + 24729 0.68 0.998896
Target:  5'- gCCGG-GGcuccugGGGUGCUGCcGGg -3'
miRNA:   3'- -GGCUaCCuaa---UCCACGACGaCC- -5'
13457 5' -45.5 NC_003409.1 + 131398 0.68 0.99864
Target:  5'- gCCGuGUGGccgcguuGGUGCUGcCUGGg -3'
miRNA:   3'- -GGC-UACCuaau---CCACGAC-GACC- -5'
13457 5' -45.5 NC_003409.1 + 88195 0.68 0.998337
Target:  5'- cCCGAUggcgccuuagggGGAgcAGGUGCUGCa-- -3'
miRNA:   3'- -GGCUA------------CCUaaUCCACGACGacc -5'
13457 5' -45.5 NC_003409.1 + 73098 0.69 0.995827
Target:  5'- uCCGA-GGAUUAuGGcGCcGCUGGa -3'
miRNA:   3'- -GGCUaCCUAAU-CCaCGaCGACC- -5'
13457 5' -45.5 NC_003409.1 + 121726 0.7 0.992089
Target:  5'- aCGA-GGGUUgcaggaaacAGGUGCUGCcGGg -3'
miRNA:   3'- gGCUaCCUAA---------UCCACGACGaCC- -5'
13457 5' -45.5 NC_003409.1 + 23129 0.71 0.989414
Target:  5'- aCCGcaaGUGGAUUuGGUGCUGUUa- -3'
miRNA:   3'- -GGC---UACCUAAuCCACGACGAcc -5'
13457 5' -45.5 NC_003409.1 + 116460 0.73 0.960556
Target:  5'- aUCGGUGGAUgGGGUGCgaagGCccgGGa -3'
miRNA:   3'- -GGCUACCUAaUCCACGa---CGa--CC- -5'
13457 5' -45.5 NC_003409.1 + 27256 0.78 0.824113
Target:  5'- -gGAcGGGcggUGGGUGCUGCUGGa -3'
miRNA:   3'- ggCUaCCUa--AUCCACGACGACC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.