miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13458 3' -48.4 NC_003409.1 + 128824 0.66 0.994202
Target:  5'- cCCGGCAagAGUUCCcuGGGCcgCg-- -3'
miRNA:   3'- -GGCCGU--UCAAGG--UCCGuaGgau -5'
13458 3' -48.4 NC_003409.1 + 105061 0.66 0.994202
Target:  5'- cCCGGCGAcc-CCAGGCG-CCa- -3'
miRNA:   3'- -GGCCGUUcaaGGUCCGUaGGau -5'
13458 3' -48.4 NC_003409.1 + 43540 0.66 0.994202
Target:  5'- gCaGCAGGUggCC-GGCGUCCUGg -3'
miRNA:   3'- gGcCGUUCAa-GGuCCGUAGGAU- -5'
13458 3' -48.4 NC_003409.1 + 131972 0.66 0.993219
Target:  5'- cCUGGCA---UCCAGGCAcCCa- -3'
miRNA:   3'- -GGCCGUucaAGGUCCGUaGGau -5'
13458 3' -48.4 NC_003409.1 + 102179 0.66 0.992108
Target:  5'- cUCGGCucaaaaAGGaUUCCAGGCGggCCUGg -3'
miRNA:   3'- -GGCCG------UUC-AAGGUCCGUa-GGAU- -5'
13458 3' -48.4 NC_003409.1 + 86133 0.66 0.992108
Target:  5'- gCGGCuguGGUUgCCAGGUAUCg-- -3'
miRNA:   3'- gGCCGu--UCAA-GGUCCGUAGgau -5'
13458 3' -48.4 NC_003409.1 + 47575 0.67 0.987889
Target:  5'- gCGGCAcGa--CAGGCAUCCUc -3'
miRNA:   3'- gGCCGUuCaagGUCCGUAGGAu -5'
13458 3' -48.4 NC_003409.1 + 57038 0.67 0.98615
Target:  5'- aCCGGCAAagcCCAGGCGauUCCc- -3'
miRNA:   3'- -GGCCGUUcaaGGUCCGU--AGGau -5'
13458 3' -48.4 NC_003409.1 + 54403 0.67 0.984226
Target:  5'- aCUGGuCGAGUaCCAGGCggCCa- -3'
miRNA:   3'- -GGCC-GUUCAaGGUCCGuaGGau -5'
13458 3' -48.4 NC_003409.1 + 26747 0.67 0.982106
Target:  5'- gUGGUuAGUUCUAGGCAgcUCCg- -3'
miRNA:   3'- gGCCGuUCAAGGUCCGU--AGGau -5'
13458 3' -48.4 NC_003409.1 + 103571 0.68 0.973581
Target:  5'- gCCaGGUAGGUUUCcuggaguucagaaaGGGCGUCCUGu -3'
miRNA:   3'- -GG-CCGUUCAAGG--------------UCCGUAGGAU- -5'
13458 3' -48.4 NC_003409.1 + 27774 0.68 0.971447
Target:  5'- gCCGGguAGUUUCAGGgGUCa-- -3'
miRNA:   3'- -GGCCguUCAAGGUCCgUAGgau -5'
13458 3' -48.4 NC_003409.1 + 132481 0.69 0.960895
Target:  5'- aCCGGUAug-UCCAGGgGUCCc- -3'
miRNA:   3'- -GGCCGUucaAGGUCCgUAGGau -5'
13458 3' -48.4 NC_003409.1 + 15596 0.69 0.960895
Target:  5'- cCCGGUAAGgcagccagCCAGGCA-CCa- -3'
miRNA:   3'- -GGCCGUUCaa------GGUCCGUaGGau -5'
13458 3' -48.4 NC_003409.1 + 57025 0.69 0.95252
Target:  5'- gCGGCAgaucgagauagAGUUCCAGGCAUg--- -3'
miRNA:   3'- gGCCGU-----------UCAAGGUCCGUAggau -5'
13458 3' -48.4 NC_003409.1 + 103646 0.69 0.95252
Target:  5'- gCUGGCGGGU--CGGGUGUCCUGa -3'
miRNA:   3'- -GGCCGUUCAagGUCCGUAGGAU- -5'
13458 3' -48.4 NC_003409.1 + 68180 0.7 0.943017
Target:  5'- aCGGCGGagUCCgAGGCGUCCa- -3'
miRNA:   3'- gGCCGUUcaAGG-UCCGUAGGau -5'
13458 3' -48.4 NC_003409.1 + 111741 0.7 0.937298
Target:  5'- uCCGGCGGGUuagcaguccggggUCCAcGGCgauGUCCUGa -3'
miRNA:   3'- -GGCCGUUCA-------------AGGU-CCG---UAGGAU- -5'
13458 3' -48.4 NC_003409.1 + 121144 1.04 0.015907
Target:  5'- aCCGGCAAGUUCCAGGCAUCCUAa -3'
miRNA:   3'- -GGCCGUUCAAGGUCCGUAGGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.