miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13459 5' -43.3 NC_003409.1 + 15635 0.66 0.999997
Target:  5'- cCCggaaGGAGUACUGCGGgaaaugAGaCa -3'
miRNA:   3'- -GGa---UCUCAUGACGCCaaa---UC-Ga -5'
13459 5' -43.3 NC_003409.1 + 116387 0.66 0.999997
Target:  5'- gUCUAGgcggugucuuuuuAGUugUGCGG-UUAGCUc -3'
miRNA:   3'- -GGAUC-------------UCAugACGCCaAAUCGA- -5'
13459 5' -43.3 NC_003409.1 + 118472 0.66 0.999995
Target:  5'- uCCUGGGGUGCggggUGCGGgggaccGCg -3'
miRNA:   3'- -GGAUCUCAUG----ACGCCaaau--CGa -5'
13459 5' -43.3 NC_003409.1 + 45972 0.66 0.999995
Target:  5'- aCC-AGGGUGCaUGCGGUguuuugccUGGCa -3'
miRNA:   3'- -GGaUCUCAUG-ACGCCAa-------AUCGa -5'
13459 5' -43.3 NC_003409.1 + 13865 0.66 0.999993
Target:  5'- uCCUGGAccucaUACUGCGGg--AGCc -3'
miRNA:   3'- -GGAUCUc----AUGACGCCaaaUCGa -5'
13459 5' -43.3 NC_003409.1 + 11969 0.67 0.99997
Target:  5'- cCCUGGGGUGCUaGUGuGUagaagUAGCa -3'
miRNA:   3'- -GGAUCUCAUGA-CGC-CAa----AUCGa -5'
13459 5' -43.3 NC_003409.1 + 133040 0.68 0.999896
Target:  5'- cCCUGGuGU-UUGCGGUggUGGCa -3'
miRNA:   3'- -GGAUCuCAuGACGCCAa-AUCGa -5'
13459 5' -43.3 NC_003409.1 + 109793 0.68 0.999862
Target:  5'- uUCUGGAcUGCUGCGGgu--GCUa -3'
miRNA:   3'- -GGAUCUcAUGACGCCaaauCGA- -5'
13459 5' -43.3 NC_003409.1 + 87594 0.69 0.999488
Target:  5'- uCCUcAGGGUGCUGCGaGUg-AGCg -3'
miRNA:   3'- -GGA-UCUCAUGACGC-CAaaUCGa -5'
13459 5' -43.3 NC_003409.1 + 126748 0.71 0.998086
Target:  5'- cUCUGGAG-ACUGCGuGggUGGCa -3'
miRNA:   3'- -GGAUCUCaUGACGC-CaaAUCGa -5'
13459 5' -43.3 NC_003409.1 + 24721 0.73 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
13459 5' -43.3 NC_003409.1 + 24701 0.73 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
13459 5' -43.3 NC_003409.1 + 24681 0.73 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
13459 5' -43.3 NC_003409.1 + 24661 0.73 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
13459 5' -43.3 NC_003409.1 + 24641 0.73 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
13459 5' -43.3 NC_003409.1 + 24601 0.73 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
13459 5' -43.3 NC_003409.1 + 24621 0.73 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
13459 5' -43.3 NC_003409.1 + 24581 0.73 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
13459 5' -43.3 NC_003409.1 + 24561 0.73 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5'
13459 5' -43.3 NC_003409.1 + 24541 0.73 0.989436
Target:  5'- uCCUGGGGUGCUGcCGG---GGCUc -3'
miRNA:   3'- -GGAUCUCAUGAC-GCCaaaUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.