Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13460 | 5' | -46.6 | NC_003409.1 | + | 121465 | 1.06 | 0.022956 |
Target: 5'- uCGCUGCCGUCCUCAGAAUGUGAu -3' miRNA: 3'- -GCGACGGCAGGAGUCUUACACU- -5' |
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13460 | 5' | -46.6 | NC_003409.1 | + | 34186 | 0.73 | 0.926585 |
Target: 5'- gGC-GaCCGUCgUCAGggUGUGAg -3' miRNA: 3'- gCGaC-GGCAGgAGUCuuACACU- -5' |
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13460 | 5' | -46.6 | NC_003409.1 | + | 102147 | 0.7 | 0.98615 |
Target: 5'- aGCUGCgGUCuCUCGGcuuccgcGUGUGAu -3' miRNA: 3'- gCGACGgCAG-GAGUCu------UACACU- -5' |
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13460 | 5' | -46.6 | NC_003409.1 | + | 127708 | 0.67 | 0.99863 |
Target: 5'- aGCUGCUGcUCUUgGGGAcGUGAc -3' miRNA: 3'- gCGACGGC-AGGAgUCUUaCACU- -5' |
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13460 | 5' | -46.6 | NC_003409.1 | + | 53225 | 0.66 | 0.998886 |
Target: 5'- gGCUGCUGUUCUUGGGc-GUGGa -3' miRNA: 3'- gCGACGGCAGGAGUCUuaCACU- -5' |
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13460 | 5' | -46.6 | NC_003409.1 | + | 43746 | 0.66 | 0.999099 |
Target: 5'- aCGCucUGCCGUCUgUGGAagGUGAc -3' miRNA: 3'- -GCG--ACGGCAGGaGUCUuaCACU- -5' |
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13460 | 5' | -46.6 | NC_003409.1 | + | 109884 | 0.66 | 0.999099 |
Target: 5'- aGCUGCCuuauuaCCUCAGGAUcuaggcaaGUGAc -3' miRNA: 3'- gCGACGGca----GGAGUCUUA--------CACU- -5' |
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13460 | 5' | -46.6 | NC_003409.1 | + | 75591 | 0.66 | 0.999261 |
Target: 5'- aCGCgGCCGUaucugCCUUgcuuucgcgugggAGAAUGUGAc -3' miRNA: 3'- -GCGaCGGCA-----GGAG-------------UCUUACACU- -5' |
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13460 | 5' | -46.6 | NC_003409.1 | + | 121584 | 0.66 | 0.999424 |
Target: 5'- aCGUcGCgGUCa-CAGAAUGUGAc -3' miRNA: 3'- -GCGaCGgCAGgaGUCUUACACU- -5' |
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13460 | 5' | -46.6 | NC_003409.1 | + | 105472 | 0.66 | 0.999544 |
Target: 5'- cCGCUGCU-UUCUCGGggUGg-- -3' miRNA: 3'- -GCGACGGcAGGAGUCuuACacu -5' |
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13460 | 5' | -46.6 | NC_003409.1 | + | 80805 | 0.66 | 0.999544 |
Target: 5'- uCGCUcuagGCCGUCUUCcuGAAgcauUGUGAa -3' miRNA: 3'- -GCGA----CGGCAGGAGu-CUU----ACACU- -5' |
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13460 | 5' | -46.6 | NC_003409.1 | + | 15546 | 0.68 | 0.994985 |
Target: 5'- aUGCUGCuCGaacagcaauugaaUCCUCAGggUGgUGGu -3' miRNA: 3'- -GCGACG-GC-------------AGGAGUCuuAC-ACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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