miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13462 5' -53.9 NC_003409.1 + 13334 0.66 0.959461
Target:  5'- gAGGUGUggGUGCagguGGAGCGaauCGcCGGg -3'
miRNA:   3'- gUUUACGuuCACG----CCUCGCc--GCuGCC- -5'
13462 5' -53.9 NC_003409.1 + 114972 0.66 0.959461
Target:  5'- gCGGggGUggGUGUGGAGCagggcaGGUGACc- -3'
miRNA:   3'- -GUUuaCGuuCACGCCUCG------CCGCUGcc -5'
13462 5' -53.9 NC_003409.1 + 53132 0.66 0.951637
Target:  5'- ----aGguGGUGCGccGCGGCGACc- -3'
miRNA:   3'- guuuaCguUCACGCcuCGCCGCUGcc -5'
13462 5' -53.9 NC_003409.1 + 30328 0.66 0.94286
Target:  5'- ----aGCAuGcUGCaGGuuAGCGGCGAUGGa -3'
miRNA:   3'- guuuaCGUuC-ACG-CC--UCGCCGCUGCC- -5'
13462 5' -53.9 NC_003409.1 + 100085 0.66 0.938107
Target:  5'- --cGUGCGGGccaaugccaugGCGGGGCGGCuGugGc -3'
miRNA:   3'- guuUACGUUCa----------CGCCUCGCCG-CugCc -5'
13462 5' -53.9 NC_003409.1 + 118476 0.67 0.922367
Target:  5'- gGGGUGCgGGGUGCGGGGgaccGCGcCGGg -3'
miRNA:   3'- gUUUACG-UUCACGCCUCgc--CGCuGCC- -5'
13462 5' -53.9 NC_003409.1 + 3046 0.67 0.921804
Target:  5'- cCAAGUGCAuugGCuauuuuaGGGGCGGUGACc- -3'
miRNA:   3'- -GUUUACGUucaCG-------CCUCGCCGCUGcc -5'
13462 5' -53.9 NC_003409.1 + 59015 0.67 0.916626
Target:  5'- ----cGCGGGcucuggucuuUGCugGGAGgGGCGGCGGu -3'
miRNA:   3'- guuuaCGUUC----------ACG--CCUCgCCGCUGCC- -5'
13462 5' -53.9 NC_003409.1 + 72329 0.68 0.874885
Target:  5'- ----aGCGGGUacGUGGcagucuggauugagGGUGGCGACGGa -3'
miRNA:   3'- guuuaCGUUCA--CGCC--------------UCGCCGCUGCC- -5'
13462 5' -53.9 NC_003409.1 + 110972 0.69 0.862047
Target:  5'- ----gGCAGaUGCGGuauaGGCGACGGg -3'
miRNA:   3'- guuuaCGUUcACGCCucg-CCGCUGCC- -5'
13462 5' -53.9 NC_003409.1 + 45492 0.69 0.854203
Target:  5'- ----gGCuuuGGUGCGuucGCGGUGGCGGa -3'
miRNA:   3'- guuuaCGu--UCACGCcu-CGCCGCUGCC- -5'
13462 5' -53.9 NC_003409.1 + 56440 0.69 0.837062
Target:  5'- uGAGUGUcauGGcgGCGGAGUucaccggccuaauGGCGGCGGu -3'
miRNA:   3'- gUUUACGu--UCa-CGCCUCG-------------CCGCUGCC- -5'
13462 5' -53.9 NC_003409.1 + 110746 0.71 0.755912
Target:  5'- ---uUGUGAGUgGCGGcGUGGCGGCGa -3'
miRNA:   3'- guuuACGUUCA-CGCCuCGCCGCUGCc -5'
13462 5' -53.9 NC_003409.1 + 29864 0.71 0.736205
Target:  5'- gGGAUGgGGGUGUGGgauGGgGGUGugGGa -3'
miRNA:   3'- gUUUACgUUCACGCC---UCgCCGCugCC- -5'
13462 5' -53.9 NC_003409.1 + 29786 0.71 0.736205
Target:  5'- gGGAUGgGGGUGUGGgauGGgGGUGugGGa -3'
miRNA:   3'- gUUUACgUUCACGCC---UCgCCGCugCC- -5'
13462 5' -53.9 NC_003409.1 + 29747 0.71 0.736205
Target:  5'- gGGAUGgGGGUGUGGgauGGgGGUGugGGa -3'
miRNA:   3'- gUUUACgUUCACGCC---UCgCCGCugCC- -5'
13462 5' -53.9 NC_003409.1 + 29825 0.71 0.736205
Target:  5'- gGGAUGgGGGUGUGGgauGGgGGUGugGGa -3'
miRNA:   3'- gUUUACgUUCACGCC---UCgCCGCugCC- -5'
13462 5' -53.9 NC_003409.1 + 10110 0.72 0.705968
Target:  5'- gGGAUGCGGa-GgGGGGCGGCGAUGa -3'
miRNA:   3'- gUUUACGUUcaCgCCUCGCCGCUGCc -5'
13462 5' -53.9 NC_003409.1 + 103620 0.74 0.571353
Target:  5'- -uAGUGCAGGgacaacgGCagGGGGCGGCuGGCGGg -3'
miRNA:   3'- guUUACGUUCa------CG--CCUCGCCG-CUGCC- -5'
13462 5' -53.9 NC_003409.1 + 123621 1.1 0.00358
Target:  5'- cCAAAUGCAAGUGCGGAGCGGCGACGGu -3'
miRNA:   3'- -GUUUACGUUCACGCCUCGCCGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.