Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13462 | 5' | -53.9 | NC_003409.1 | + | 13334 | 0.66 | 0.959461 |
Target: 5'- gAGGUGUggGUGCagguGGAGCGaauCGcCGGg -3' miRNA: 3'- gUUUACGuuCACG----CCUCGCc--GCuGCC- -5' |
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13462 | 5' | -53.9 | NC_003409.1 | + | 114972 | 0.66 | 0.959461 |
Target: 5'- gCGGggGUggGUGUGGAGCagggcaGGUGACc- -3' miRNA: 3'- -GUUuaCGuuCACGCCUCG------CCGCUGcc -5' |
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13462 | 5' | -53.9 | NC_003409.1 | + | 53132 | 0.66 | 0.951637 |
Target: 5'- ----aGguGGUGCGccGCGGCGACc- -3' miRNA: 3'- guuuaCguUCACGCcuCGCCGCUGcc -5' |
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13462 | 5' | -53.9 | NC_003409.1 | + | 30328 | 0.66 | 0.94286 |
Target: 5'- ----aGCAuGcUGCaGGuuAGCGGCGAUGGa -3' miRNA: 3'- guuuaCGUuC-ACG-CC--UCGCCGCUGCC- -5' |
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13462 | 5' | -53.9 | NC_003409.1 | + | 100085 | 0.66 | 0.938107 |
Target: 5'- --cGUGCGGGccaaugccaugGCGGGGCGGCuGugGc -3' miRNA: 3'- guuUACGUUCa----------CGCCUCGCCG-CugCc -5' |
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13462 | 5' | -53.9 | NC_003409.1 | + | 118476 | 0.67 | 0.922367 |
Target: 5'- gGGGUGCgGGGUGCGGGGgaccGCGcCGGg -3' miRNA: 3'- gUUUACG-UUCACGCCUCgc--CGCuGCC- -5' |
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13462 | 5' | -53.9 | NC_003409.1 | + | 3046 | 0.67 | 0.921804 |
Target: 5'- cCAAGUGCAuugGCuauuuuaGGGGCGGUGACc- -3' miRNA: 3'- -GUUUACGUucaCG-------CCUCGCCGCUGcc -5' |
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13462 | 5' | -53.9 | NC_003409.1 | + | 59015 | 0.67 | 0.916626 |
Target: 5'- ----cGCGGGcucuggucuuUGCugGGAGgGGCGGCGGu -3' miRNA: 3'- guuuaCGUUC----------ACG--CCUCgCCGCUGCC- -5' |
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13462 | 5' | -53.9 | NC_003409.1 | + | 72329 | 0.68 | 0.874885 |
Target: 5'- ----aGCGGGUacGUGGcagucuggauugagGGUGGCGACGGa -3' miRNA: 3'- guuuaCGUUCA--CGCC--------------UCGCCGCUGCC- -5' |
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13462 | 5' | -53.9 | NC_003409.1 | + | 110972 | 0.69 | 0.862047 |
Target: 5'- ----gGCAGaUGCGGuauaGGCGACGGg -3' miRNA: 3'- guuuaCGUUcACGCCucg-CCGCUGCC- -5' |
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13462 | 5' | -53.9 | NC_003409.1 | + | 45492 | 0.69 | 0.854203 |
Target: 5'- ----gGCuuuGGUGCGuucGCGGUGGCGGa -3' miRNA: 3'- guuuaCGu--UCACGCcu-CGCCGCUGCC- -5' |
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13462 | 5' | -53.9 | NC_003409.1 | + | 56440 | 0.69 | 0.837062 |
Target: 5'- uGAGUGUcauGGcgGCGGAGUucaccggccuaauGGCGGCGGu -3' miRNA: 3'- gUUUACGu--UCa-CGCCUCG-------------CCGCUGCC- -5' |
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13462 | 5' | -53.9 | NC_003409.1 | + | 110746 | 0.71 | 0.755912 |
Target: 5'- ---uUGUGAGUgGCGGcGUGGCGGCGa -3' miRNA: 3'- guuuACGUUCA-CGCCuCGCCGCUGCc -5' |
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13462 | 5' | -53.9 | NC_003409.1 | + | 29864 | 0.71 | 0.736205 |
Target: 5'- gGGAUGgGGGUGUGGgauGGgGGUGugGGa -3' miRNA: 3'- gUUUACgUUCACGCC---UCgCCGCugCC- -5' |
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13462 | 5' | -53.9 | NC_003409.1 | + | 29786 | 0.71 | 0.736205 |
Target: 5'- gGGAUGgGGGUGUGGgauGGgGGUGugGGa -3' miRNA: 3'- gUUUACgUUCACGCC---UCgCCGCugCC- -5' |
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13462 | 5' | -53.9 | NC_003409.1 | + | 29747 | 0.71 | 0.736205 |
Target: 5'- gGGAUGgGGGUGUGGgauGGgGGUGugGGa -3' miRNA: 3'- gUUUACgUUCACGCC---UCgCCGCugCC- -5' |
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13462 | 5' | -53.9 | NC_003409.1 | + | 29825 | 0.71 | 0.736205 |
Target: 5'- gGGAUGgGGGUGUGGgauGGgGGUGugGGa -3' miRNA: 3'- gUUUACgUUCACGCC---UCgCCGCugCC- -5' |
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13462 | 5' | -53.9 | NC_003409.1 | + | 10110 | 0.72 | 0.705968 |
Target: 5'- gGGAUGCGGa-GgGGGGCGGCGAUGa -3' miRNA: 3'- gUUUACGUUcaCgCCUCGCCGCUGCc -5' |
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13462 | 5' | -53.9 | NC_003409.1 | + | 103620 | 0.74 | 0.571353 |
Target: 5'- -uAGUGCAGGgacaacgGCagGGGGCGGCuGGCGGg -3' miRNA: 3'- guUUACGUUCa------CG--CCUCGCCG-CUGCC- -5' |
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13462 | 5' | -53.9 | NC_003409.1 | + | 123621 | 1.1 | 0.00358 |
Target: 5'- cCAAAUGCAAGUGCGGAGCGGCGACGGu -3' miRNA: 3'- -GUUUACGUUCACGCCUCGCCGCUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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