miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13464 3' -57.1 NC_003409.1 + 70324 0.66 0.854681
Target:  5'- aAGGACCuUUAgauacccucuCCcGGCAUGUGCGCGu -3'
miRNA:   3'- cUCCUGGcAAU----------GGaCCGUGCGCGUGU- -5'
13464 3' -57.1 NC_003409.1 + 24972 0.67 0.767404
Target:  5'- -cGGACCGcauCCgucgcaaGCACGCGCAUAu -3'
miRNA:   3'- cuCCUGGCaauGGac-----CGUGCGCGUGU- -5'
13464 3' -57.1 NC_003409.1 + 46663 0.67 0.757862
Target:  5'- aAGGACUGUacaUGCCcGGCA-GCGCAg- -3'
miRNA:   3'- cUCCUGGCA---AUGGaCCGUgCGCGUgu -5'
13464 3' -57.1 NC_003409.1 + 77438 0.68 0.7286
Target:  5'- uGGGACCGggcgaagGCCUGGCGCugaGCcCAg -3'
miRNA:   3'- cUCCUGGCaa-----UGGACCGUGcg-CGuGU- -5'
13464 3' -57.1 NC_003409.1 + 30249 0.68 0.72761
Target:  5'- -uGGACgGUcACCagGGCacauagcACGCGCACAg -3'
miRNA:   3'- cuCCUGgCAaUGGa-CCG-------UGCGCGUGU- -5'
13464 3' -57.1 NC_003409.1 + 79685 0.68 0.722649
Target:  5'- cGGGGuuGUUcaagccGCUguuggagauaaucggUGGCGCGCGCGCAc -3'
miRNA:   3'- cUCCUggCAA------UGG---------------ACCGUGCGCGUGU- -5'
13464 3' -57.1 NC_003409.1 + 37941 0.68 0.718665
Target:  5'- uAGGAUCGUaucaaucgagGCCaGGCGCGCcuGCGCAg -3'
miRNA:   3'- cUCCUGGCAa---------UGGaCCGUGCG--CGUGU- -5'
13464 3' -57.1 NC_003409.1 + 33322 0.7 0.626979
Target:  5'- gGAGGGCUGUUcucGCCUGGaGCaGCGC-CAg -3'
miRNA:   3'- -CUCCUGGCAA---UGGACCgUG-CGCGuGU- -5'
13464 3' -57.1 NC_003409.1 + 19638 0.7 0.6167
Target:  5'- aAGuGACCG-UACCagGGCACGCGUcCAg -3'
miRNA:   3'- cUC-CUGGCaAUGGa-CCGUGCGCGuGU- -5'
13464 3' -57.1 NC_003409.1 + 56318 0.7 0.596184
Target:  5'- -uGGACCaGUcuggauCCUGGUGCGUGCACu -3'
miRNA:   3'- cuCCUGG-CAau----GGACCGUGCGCGUGu -5'
13464 3' -57.1 NC_003409.1 + 119948 0.7 0.596184
Target:  5'- ---cGCCGgcGCCUGGCACGCGgccaACAu -3'
miRNA:   3'- cuccUGGCaaUGGACCGUGCGCg---UGU- -5'
13464 3' -57.1 NC_003409.1 + 103344 0.71 0.535492
Target:  5'- --uGGCgGUgcaaCUGGCACGCGCACGa -3'
miRNA:   3'- cucCUGgCAaug-GACCGUGCGCGUGU- -5'
13464 3' -57.1 NC_003409.1 + 109669 0.72 0.515716
Target:  5'- ---cACCGUUcCCcggGGCGCGCGCGCAu -3'
miRNA:   3'- cuccUGGCAAuGGa--CCGUGCGCGUGU- -5'
13464 3' -57.1 NC_003409.1 + 102552 0.73 0.439982
Target:  5'- gGAGGcGCCGUaccggcaaACCUGGCGCGCG-ACAu -3'
miRNA:   3'- -CUCC-UGGCAa-------UGGACCGUGCGCgUGU- -5'
13464 3' -57.1 NC_003409.1 + 19817 0.76 0.316966
Target:  5'- gGGGGACCccgGUUGCCUGG-ACGCGUGCc -3'
miRNA:   3'- -CUCCUGG---CAAUGGACCgUGCGCGUGu -5'
13464 3' -57.1 NC_003409.1 + 132787 1.09 0.001988
Target:  5'- cGAGGACCGUUACCUGGCACGCGCACAg -3'
miRNA:   3'- -CUCCUGGCAAUGGACCGUGCGCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.