miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13464 5' -58.2 NC_003409.1 + 105224 0.66 0.790295
Target:  5'- aGCGCUGUGGcGCCUggggUCGcCGGGGg- -3'
miRNA:   3'- gCGCGACGUCaUGGA----GGUuGCCCCag -5'
13464 5' -58.2 NC_003409.1 + 81506 0.67 0.743381
Target:  5'- gCGCGCcGCAcGUACUgcgCCuugccguugggGGCGGGGUg -3'
miRNA:   3'- -GCGCGaCGU-CAUGGa--GG-----------UUGCCCCAg -5'
13464 5' -58.2 NC_003409.1 + 115815 0.67 0.733673
Target:  5'- gGCGCUGCAGacCCUUCAguGCGaGGUa -3'
miRNA:   3'- gCGCGACGUCauGGAGGU--UGCcCCAg -5'
13464 5' -58.2 NC_003409.1 + 130302 0.68 0.704062
Target:  5'- gGCGCUGUacAGUGCCUgCAguaACGaGGUUa -3'
miRNA:   3'- gCGCGACG--UCAUGGAgGU---UGCcCCAG- -5'
13464 5' -58.2 NC_003409.1 + 101522 0.69 0.612915
Target:  5'- aGCGC-GCGcUGCCU-CAAgGGGGUCg -3'
miRNA:   3'- gCGCGaCGUcAUGGAgGUUgCCCCAG- -5'
13464 5' -58.2 NC_003409.1 + 103484 0.69 0.592615
Target:  5'- aGcCGCUGCAGUaACCggauguaGGCGGGGUa -3'
miRNA:   3'- gC-GCGACGUCA-UGGagg----UUGCCCCAg -5'
13464 5' -58.2 NC_003409.1 + 51962 0.7 0.571424
Target:  5'- aCGCGCcagccucUGCAGUuCCUCCAAa-GGGUg -3'
miRNA:   3'- -GCGCG-------ACGUCAuGGAGGUUgcCCCAg -5'
13464 5' -58.2 NC_003409.1 + 83075 0.71 0.522802
Target:  5'- aGCGuUUGCAG-GCCUCCGGCGGcugcGGUUu -3'
miRNA:   3'- gCGC-GACGUCaUGGAGGUUGCC----CCAG- -5'
13464 5' -58.2 NC_003409.1 + 49899 0.71 0.499563
Target:  5'- aCGCGCccacGcCAGUaccggacGCCUCCGuguuguucguauacGCGGGGUCg -3'
miRNA:   3'- -GCGCGa---C-GUCA-------UGGAGGU--------------UGCCCCAG- -5'
13464 5' -58.2 NC_003409.1 + 133041 0.72 0.438242
Target:  5'- aGCGcCUGCAgGUGCCUcaCCAcCGGGGcCg -3'
miRNA:   3'- gCGC-GACGU-CAUGGA--GGUuGCCCCaG- -5'
13464 5' -58.2 NC_003409.1 + 118658 0.73 0.411826
Target:  5'- uGCGaaccCUGCAGUACC-CCGGCGcGGUCc -3'
miRNA:   3'- gCGC----GACGUCAUGGaGGUUGCcCCAG- -5'
13464 5' -58.2 NC_003409.1 + 132822 1.09 0.001542
Target:  5'- gCGCGCUGCAGUACCUCCAACGGGGUCu -3'
miRNA:   3'- -GCGCGACGUCAUGGAGGUUGCCCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.