Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13465 | 3' | -51.6 | NC_003409.1 | + | 84807 | 0.7 | 0.870345 |
Target: 5'- aCGCCucguuuaaAGGCACCAGGGGGCGcagGCGa -3' miRNA: 3'- -GUGGcg------UUUGUGGUCCCUCGUua-UGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 131391 | 0.77 | 0.520928 |
Target: 5'- gGCCGCGuugguGCuGCCuGGGAGCAGUGCc -3' miRNA: 3'- gUGGCGUu----UG-UGGuCCCUCGUUAUGu -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 15953 | 0.76 | 0.583834 |
Target: 5'- aCACUGCAAACGCaC-GGGAGCAcUGCu -3' miRNA: 3'- -GUGGCGUUUGUG-GuCCCUCGUuAUGu -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 3412 | 0.66 | 0.976939 |
Target: 5'- -cCCGCAGGgACCAguGGGGGCc--GCAg -3' miRNA: 3'- guGGCGUUUgUGGU--CCCUCGuuaUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 41433 | 0.66 | 0.976939 |
Target: 5'- gCACCGCAauaaacaucAACAUCAGuGGGGaCAugcUGCAc -3' miRNA: 3'- -GUGGCGU---------UUGUGGUC-CCUC-GUu--AUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 45982 | 0.66 | 0.974299 |
Target: 5'- uCAUgGCAAA-ACCAGGGuGCA-UGCGg -3' miRNA: 3'- -GUGgCGUUUgUGGUCCCuCGUuAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 129649 | 0.67 | 0.971446 |
Target: 5'- ---gGCAGAUACCcaGGAGCAGUAUAu -3' miRNA: 3'- guggCGUUUGUGGucCCUCGUUAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 93022 | 0.67 | 0.96507 |
Target: 5'- aACUGCGAGCcCuCAGGGccCGAUGCAg -3' miRNA: 3'- gUGGCGUUUGuG-GUCCCucGUUAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 131703 | 0.67 | 0.957757 |
Target: 5'- uGCUGCGGGCgGCCAGGGAcuaccgcuGCGugGCAc -3' miRNA: 3'- gUGGCGUUUG-UGGUCCCU--------CGUuaUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 33017 | 0.68 | 0.949459 |
Target: 5'- cCGCCGCAAggaGCAgCCugcaGGGGAGCAc---- -3' miRNA: 3'- -GUGGCGUU---UGU-GG----UCCCUCGUuaugu -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 107469 | 0.68 | 0.949459 |
Target: 5'- -uCCGCGggUA-CGGGGAGUAGUAUu -3' miRNA: 3'- guGGCGUuuGUgGUCCCUCGUUAUGu -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 132440 | 0.68 | 0.944931 |
Target: 5'- ---gGCAAugGCCaugGGGGAGCAGgccUACAa -3' miRNA: 3'- guggCGUUugUGG---UCCCUCGUU---AUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 72184 | 0.68 | 0.940144 |
Target: 5'- gACCGCGGACugCAcaGAGUggUGCc -3' miRNA: 3'- gUGGCGUUUGugGUccCUCGuuAUGu -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 84330 | 0.68 | 0.929787 |
Target: 5'- gGCCuGCGAGauaGCCAagcGGGAGCuAUGCGa -3' miRNA: 3'- gUGG-CGUUUg--UGGU---CCCUCGuUAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 81504 | 0.7 | 0.892441 |
Target: 5'- gCGCCGCAcguacuGCGCCuugccguuGGGGGCGGggugACAg -3' miRNA: 3'- -GUGGCGUu-----UGUGGu-------CCCUCGUUa---UGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 128048 | 0.7 | 0.892441 |
Target: 5'- aACCGgGAGCACaguGGGGGGUAAauucUGCAa -3' miRNA: 3'- gUGGCgUUUGUGg--UCCCUCGUU----AUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 4368 | 0.7 | 0.862501 |
Target: 5'- gGCCGCAAACAgCuGGGcGCcaauAUGCAa -3' miRNA: 3'- gUGGCGUUUGUgGuCCCuCGu---UAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 52261 | 0.7 | 0.862501 |
Target: 5'- cCACCGCGuucguaAACACacacauagUAGGGAGCAcccgaGUACAc -3' miRNA: 3'- -GUGGCGU------UUGUG--------GUCCCUCGU-----UAUGU- -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 53287 | 0.71 | 0.828919 |
Target: 5'- uCGCCGCGGcGCACCAccuGGGAGguAUGa- -3' miRNA: 3'- -GUGGCGUU-UGUGGU---CCCUCguUAUgu -5' |
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13465 | 3' | -51.6 | NC_003409.1 | + | 75115 | 0.71 | 0.82001 |
Target: 5'- gACCGguAugGCCGGGGgcuGGCAAccUACGu -3' miRNA: 3'- gUGGCguUugUGGUCCC---UCGUU--AUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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