miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13465 5' -59.1 NC_003409.1 + 50762 0.66 0.761436
Target:  5'- gAGUGCUUUGCgAgggugUGCCGCCUagACa -3'
miRNA:   3'- -UCACGAGACGgUg----GCGGCGGAagUGc -5'
13465 5' -59.1 NC_003409.1 + 31540 0.66 0.751951
Target:  5'- aAGUGUaugugacauuUUUGCCGCUGUgGUCUUCAUu -3'
miRNA:   3'- -UCACG----------AGACGGUGGCGgCGGAAGUGc -5'
13465 5' -59.1 NC_003409.1 + 102291 0.66 0.750997
Target:  5'- cGGUGC-CUGggcagcuacagucCCACCgGCUugGCCUUCACa -3'
miRNA:   3'- -UCACGaGAC-------------GGUGG-CGG--CGGAAGUGc -5'
13465 5' -59.1 NC_003409.1 + 90322 0.67 0.683155
Target:  5'- uGGUGCUggaCUGCCGCCGgCGUCcagaCGCc -3'
miRNA:   3'- -UCACGA---GACGGUGGCgGCGGaa--GUGc -5'
13465 5' -59.1 NC_003409.1 + 60815 0.67 0.673091
Target:  5'- uAGUGggacCUCaaagGUCACCGUCGCCU-CACa -3'
miRNA:   3'- -UCAC----GAGa---CGGUGGCGGCGGAaGUGc -5'
13465 5' -59.1 NC_003409.1 + 60302 0.68 0.642736
Target:  5'- --gGCUCUcccGCCGCagCGCCGCCUg-GCGa -3'
miRNA:   3'- ucaCGAGA---CGGUG--GCGGCGGAagUGC- -5'
13465 5' -59.1 NC_003409.1 + 27681 0.69 0.592079
Target:  5'- cGGUGCg--GCCugCGCCGgCgUCGCu -3'
miRNA:   3'- -UCACGagaCGGugGCGGCgGaAGUGc -5'
13465 5' -59.1 NC_003409.1 + 74161 0.69 0.587038
Target:  5'- gGGUGUugucgccUCUGCCgccguaGCCGCCGCCguugaaucucuaCACGg -3'
miRNA:   3'- -UCACG-------AGACGG------UGGCGGCGGaa----------GUGC- -5'
13465 5' -59.1 NC_003409.1 + 62835 0.7 0.522523
Target:  5'- --cGUUgaCUGCCACgGCCGCCUuuguUUACGa -3'
miRNA:   3'- ucaCGA--GACGGUGgCGGCGGA----AGUGC- -5'
13465 5' -59.1 NC_003409.1 + 105035 0.7 0.51379
Target:  5'- uGGUGCUCgucugguggcuggugGCCACCGC-GuCCUUCAUu -3'
miRNA:   3'- -UCACGAGa--------------CGGUGGCGgC-GGAAGUGc -5'
13465 5' -59.1 NC_003409.1 + 115319 0.7 0.48419
Target:  5'- --aGgUCUGCCGCUGCCGCCauggUCGa- -3'
miRNA:   3'- ucaCgAGACGGUGGCGGCGGa---AGUgc -5'
13465 5' -59.1 NC_003409.1 + 115289 0.71 0.465533
Target:  5'- aAGUGCUUUaaGaCCACCGCCGCCgaaaaaauaCugGg -3'
miRNA:   3'- -UCACGAGA--C-GGUGGCGGCGGaa-------GugC- -5'
13465 5' -59.1 NC_003409.1 + 53066 0.71 0.447256
Target:  5'- -uUGCUCcGCCGCCGUCGCgCgaaCACGu -3'
miRNA:   3'- ucACGAGaCGGUGGCGGCG-Gaa-GUGC- -5'
13465 5' -59.1 NC_003409.1 + 49713 0.73 0.354485
Target:  5'- uGGcUGCUgUUGCCuucgACCGCCGCgUUCACGc -3'
miRNA:   3'- -UC-ACGA-GACGG----UGGCGGCGgAAGUGC- -5'
13465 5' -59.1 NC_003409.1 + 132921 1.09 0.001229
Target:  5'- aAGUGCUCUGCCACCGCCGCCUUCACGg -3'
miRNA:   3'- -UCACGAGACGGUGGCGGCGGAAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.