miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
13466	3'	-49.5	NC_003409.1	+	88167	0.66	0.996558
	Target:  5'- cGUGGcggGUUCCCGGa-GAuccGCCUGCu -3' miRNA:   3'- aUAUUaa-CAGGGGCCaaCUu--CGGACG- -5'
13466	3'	-49.5	NC_003409.1	+	133876	0.66	0.996558
	Target:  5'- uUAUGAUa-UCCCUGGggGcAGaCCUGCu -3' miRNA:   3'- -AUAUUAacAGGGGCCaaCuUC-GGACG- -5'
13466	3'	-49.5	NC_003409.1	+	118296	0.66	0.995938
	Target:  5'- ------gGUUCCCGGggagGAGGCUggggUGCg -3' miRNA:   3'- auauuaaCAGGGGCCaa--CUUCGG----ACG- -5'
13466	3'	-49.5	NC_003409.1	+	30645	0.67	0.992483
	Target:  5'- cGUAAUUcgagGUCCCCGGaagaguaGAGGgUUGCa -3' miRNA:   3'- aUAUUAA----CAGGGGCCaa-----CUUCgGACG- -5'
13466	3'	-49.5	NC_003409.1	+	61033	0.67	0.991329
	Target:  5'- uUGUAcgUGUUCCCGGgagcugUGGaagagggcacAGCCUuuGCg -3' miRNA:   3'- -AUAUuaACAGGGGCCa-----ACU----------UCGGA--CG- -5'
13466	3'	-49.5	NC_003409.1	+	133215	0.69	0.973653
	Target:  5'- cAUGAcccggCCCCGGUggUGAGGCacCUGCa -3' miRNA:   3'- aUAUUaaca-GGGGCCA--ACUUCG--GACG- -5'
13466	3'	-49.5	NC_003409.1	+	6529	0.69	0.960441
	Target:  5'- ------cGUCCCCGGgcGucccAAGCCUGa -3' miRNA:   3'- auauuaaCAGGGGCCaaC----UUCGGACg -5'
13466	3'	-49.5	NC_003409.1	+	87942	0.71	0.909431
	Target:  5'- ------cGUgCCCGGU--AGGCCUGCa -3' miRNA:   3'- auauuaaCAgGGGCCAacUUCGGACG- -5'
13466	3'	-49.5	NC_003409.1	+	34395	0.77	0.660091
	Target:  5'- aGUGAggGUCCCCGGggacgaucgccacggUGAaguuacgguggcuGGCCUGCg -3' miRNA:   3'- aUAUUaaCAGGGGCCa--------------ACU-------------UCGGACG- -5'
13466	3'	-49.5	NC_003409.1	+	133674	1.12	0.006202
	Target:  5'- uUAUAAUUGUCCCCGGUUGAAGCCUGCa -3' miRNA:   3'- -AUAUUAACAGGGGCCAACUUCGGACG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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