Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13468 | 5' | -59.3 | NC_003409.1 | + | 134298 | 1.08 | 0.001367 |
Target: 5'- cGUAGGCCAUGCCUAGAGGGCGCACCGc -3' miRNA: 3'- -CAUCCGGUACGGAUCUCCCGCGUGGC- -5' |
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13468 | 5' | -59.3 | NC_003409.1 | + | 49274 | 0.75 | 0.255467 |
Target: 5'- --uGGCCcUGCCUaguGGGGuGGCGCGCCa -3' miRNA: 3'- cauCCGGuACGGA---UCUC-CCGCGUGGc -5' |
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13468 | 5' | -59.3 | NC_003409.1 | + | 50752 | 0.73 | 0.344833 |
Target: 5'- gGUGGGCacggaGUGCUUugcGAGGGUGUGCCGc -3' miRNA: 3'- -CAUCCGg----UACGGAu--CUCCCGCGUGGC- -5' |
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13468 | 5' | -59.3 | NC_003409.1 | + | 131509 | 0.72 | 0.401508 |
Target: 5'- -gGGGCCAacggUGCCcAGuGGGUGUGCCa -3' miRNA: 3'- caUCCGGU----ACGGaUCuCCCGCGUGGc -5' |
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13468 | 5' | -59.3 | NC_003409.1 | + | 25024 | 0.72 | 0.38472 |
Target: 5'- -cAGGUUGuUGCCggggAGGGuGGCGCGCCGg -3' miRNA: 3'- caUCCGGU-ACGGa---UCUC-CCGCGUGGC- -5' |
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13468 | 5' | -59.3 | NC_003409.1 | + | 3877 | 0.71 | 0.445449 |
Target: 5'- -cGGGCguUGUCUgAGAGGGCacggGCACCa -3' miRNA: 3'- caUCCGguACGGA-UCUCCCG----CGUGGc -5' |
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13468 | 5' | -59.3 | NC_003409.1 | + | 4576 | 0.7 | 0.463764 |
Target: 5'- cGUAGGCCAgGUgCUGGAGGGUGUaagaugACCc -3' miRNA: 3'- -CAUCCGGUaCG-GAUCUCCCGCG------UGGc -5' |
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13468 | 5' | -59.3 | NC_003409.1 | + | 40592 | 0.7 | 0.491951 |
Target: 5'- -aAGGCUA-GUCUaguAGAGGGCGCGgCGc -3' miRNA: 3'- caUCCGGUaCGGA---UCUCCCGCGUgGC- -5' |
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13468 | 5' | -59.3 | NC_003409.1 | + | 87166 | 0.7 | 0.501522 |
Target: 5'- gGUGGGUgGUgcGCCggcGGAGGGCGUGgCCGa -3' miRNA: 3'- -CAUCCGgUA--CGGa--UCUCCCGCGU-GGC- -5' |
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13468 | 5' | -59.3 | NC_003409.1 | + | 103021 | 0.7 | 0.473068 |
Target: 5'- aGUAGGCUcUGgCUAGcGGGCGC-CUGg -3' miRNA: 3'- -CAUCCGGuACgGAUCuCCCGCGuGGC- -5' |
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13468 | 5' | -59.3 | NC_003409.1 | + | 109100 | 0.69 | 0.511175 |
Target: 5'- -cGGGCCccGUGCCUGGAcgGGGUcuGC-CCGg -3' miRNA: 3'- caUCCGG--UACGGAUCU--CCCG--CGuGGC- -5' |
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13468 | 5' | -59.3 | NC_003409.1 | + | 100081 | 0.68 | 0.569505 |
Target: 5'- -cGGGCCaAUGCCaUGGcGGGGCggcugugGCACCa -3' miRNA: 3'- caUCCGG-UACGG-AUC-UCCCG-------CGUGGc -5' |
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13468 | 5' | -59.3 | NC_003409.1 | + | 4362 | 0.68 | 0.600838 |
Target: 5'- aUGGaGCCucUGCCUucaAGGGCGUGCCa -3' miRNA: 3'- cAUC-CGGu-ACGGAuc-UCCCGCGUGGc -5' |
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13468 | 5' | -59.3 | NC_003409.1 | + | 12013 | 0.68 | 0.621182 |
Target: 5'- ---aGCCA-GCCUGGAGGGCcUGCUGg -3' miRNA: 3'- caucCGGUaCGGAUCUCCCGcGUGGC- -5' |
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13468 | 5' | -59.3 | NC_003409.1 | + | 111157 | 0.68 | 0.580585 |
Target: 5'- -cGGGUugCGUGUCgGGAGGGCGCcgGCCu -3' miRNA: 3'- caUCCG--GUACGGaUCUCCCGCG--UGGc -5' |
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13468 | 5' | -59.3 | NC_003409.1 | + | 24766 | 0.67 | 0.651741 |
Target: 5'- gGUGGcgcGCCGggaucccCCUccggggAGGGGGCGCGCCGg -3' miRNA: 3'- -CAUC---CGGUac-----GGA------UCUCCCGCGUGGC- -5' |
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13468 | 5' | -59.3 | NC_003409.1 | + | 36628 | 0.67 | 0.661907 |
Target: 5'- aGgcGGCCGUGCUUcaggugcaugAGAGGGaaCACCa -3' miRNA: 3'- -CauCCGGUACGGA----------UCUCCCgcGUGGc -5' |
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13468 | 5' | -59.3 | NC_003409.1 | + | 20823 | 0.67 | 0.641559 |
Target: 5'- --uGGCCugcAUGCCaaauagagAGAGGGUGCcuauGCCGg -3' miRNA: 3'- cauCCGG---UACGGa-------UCUCCCGCG----UGGC- -5' |
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13468 | 5' | -59.3 | NC_003409.1 | + | 133308 | 0.67 | 0.631371 |
Target: 5'- -aGGGCguUGCCaGGAgugguggcgauGGuGCGCACCGu -3' miRNA: 3'- caUCCGguACGGaUCU-----------CC-CGCGUGGC- -5' |
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13468 | 5' | -59.3 | NC_003409.1 | + | 87604 | 0.66 | 0.731919 |
Target: 5'- -aAGGCCggGCUccucAGGGUGCugCGa -3' miRNA: 3'- caUCCGGuaCGGauc-UCCCGCGugGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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