Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13468 | 5' | -59.3 | NC_003409.1 | + | 111157 | 0.68 | 0.580585 |
Target: 5'- -cGGGUugCGUGUCgGGAGGGCGCcgGCCu -3' miRNA: 3'- caUCCG--GUACGGaUCUCCCGCG--UGGc -5' |
|||||||
13468 | 5' | -59.3 | NC_003409.1 | + | 115696 | 0.66 | 0.692228 |
Target: 5'- aGUAGGCUggGCUUuguGGGGCgacuuGCGCCGc -3' miRNA: 3'- -CAUCCGGuaCGGAuc-UCCCG-----CGUGGC- -5' |
|||||||
13468 | 5' | -59.3 | NC_003409.1 | + | 131509 | 0.72 | 0.401508 |
Target: 5'- -gGGGCCAacggUGCCcAGuGGGUGUGCCa -3' miRNA: 3'- caUCCGGU----ACGGaUCuCCCGCGUGGc -5' |
|||||||
13468 | 5' | -59.3 | NC_003409.1 | + | 133308 | 0.67 | 0.631371 |
Target: 5'- -aGGGCguUGCCaGGAgugguggcgauGGuGCGCACCGu -3' miRNA: 3'- caUCCGguACGGaUCU-----------CC-CGCGUGGC- -5' |
|||||||
13468 | 5' | -59.3 | NC_003409.1 | + | 134298 | 1.08 | 0.001367 |
Target: 5'- cGUAGGCCAUGCCUAGAGGGCGCACCGc -3' miRNA: 3'- -CAUCCGGUACGGAUCUCCCGCGUGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home