miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1347 3' -63.8 NC_001335.1 + 23093 0.66 0.293641
Target:  5'- ---cGGCC-CCGugCUGGCCacauggUCGGACg -3'
miRNA:   3'- cuguCCGGcGGCugGACCGG------GGUCUG- -5'
1347 3' -63.8 NC_001335.1 + 50919 0.66 0.286667
Target:  5'- uGACGcccGGCCuGUCGGCCUGGCUgaacgCCAGu- -3'
miRNA:   3'- -CUGU---CCGG-CGGCUGGACCGG-----GGUCug -5'
1347 3' -63.8 NC_001335.1 + 29540 0.66 0.286667
Target:  5'- aGCAGaGCCGCguUGACCUGGCgcuugCCAGuCu -3'
miRNA:   3'- cUGUC-CGGCG--GCUGGACCGg----GGUCuG- -5'
1347 3' -63.8 NC_001335.1 + 26229 0.66 0.273112
Target:  5'- -cCAGGCC-CCGAggcgcggguUCUGGCCgCgAGACa -3'
miRNA:   3'- cuGUCCGGcGGCU---------GGACCGG-GgUCUG- -5'
1347 3' -63.8 NC_001335.1 + 2122 0.66 0.273111
Target:  5'- ---uGGCUGUCGAggUGGCCCCucGGGCg -3'
miRNA:   3'- cuguCCGGCGGCUggACCGGGG--UCUG- -5'
1347 3' -63.8 NC_001335.1 + 40972 0.66 0.273111
Target:  5'- uGCGGGCCGgUGACgUGGUggagCCC-GACg -3'
miRNA:   3'- cUGUCCGGCgGCUGgACCG----GGGuCUG- -5'
1347 3' -63.8 NC_001335.1 + 50846 0.66 0.266529
Target:  5'- -cCAGGCCGacaGGCCgGGCgucaCCGGGCa -3'
miRNA:   3'- cuGUCCGGCgg-CUGGaCCGg---GGUCUG- -5'
1347 3' -63.8 NC_001335.1 + 47000 0.67 0.24755
Target:  5'- -cCAGGCCGaaGACgUGGCCgguacgCCGGAa -3'
miRNA:   3'- cuGUCCGGCggCUGgACCGG------GGUCUg -5'
1347 3' -63.8 NC_001335.1 + 34340 0.67 0.233768
Target:  5'- aGCGGGCCGCUGgccacuccACCgaacgucuugagcuUGGCCCCuuGCg -3'
miRNA:   3'- cUGUCCGGCGGC--------UGG--------------ACCGGGGucUG- -5'
1347 3' -63.8 NC_001335.1 + 36744 0.67 0.229704
Target:  5'- -cCGGGCCGUCguaGACCUggcgcagcGGCUCCAGGa -3'
miRNA:   3'- cuGUCCGGCGG---CUGGA--------CCGGGGUCUg -5'
1347 3' -63.8 NC_001335.1 + 17649 0.67 0.224001
Target:  5'- cGAU--GCCGuuGAUCaGGCCCUGGACg -3'
miRNA:   3'- -CUGucCGGCggCUGGaCCGGGGUCUG- -5'
1347 3' -63.8 NC_001335.1 + 11252 0.68 0.215127
Target:  5'- -uCGGGgucuuguugccgaauCCGCCGACCa-GCUCCAGACg -3'
miRNA:   3'- cuGUCC---------------GGCGGCUGGacCGGGGUCUG- -5'
1347 3' -63.8 NC_001335.1 + 25289 0.68 0.212417
Target:  5'- cGACAacaagauGGaCGCCGaaGCCUGGCUCgCGGGCg -3'
miRNA:   3'- -CUGU-------CCgGCGGC--UGGACCGGG-GUCUG- -5'
1347 3' -63.8 NC_001335.1 + 40061 0.69 0.182599
Target:  5'- gGGCgAGGCCGgUGAacuCCUGGCCgUGGACc -3'
miRNA:   3'- -CUG-UCCGGCgGCU---GGACCGGgGUCUG- -5'
1347 3' -63.8 NC_001335.1 + 5946 0.69 0.16029
Target:  5'- aGCGGGUCggGCUGGCCUGuGCCgUGGACg -3'
miRNA:   3'- cUGUCCGG--CGGCUGGAC-CGGgGUCUG- -5'
1347 3' -63.8 NC_001335.1 + 9753 0.7 0.140468
Target:  5'- gGGCAcgauGGUcgaCGCCGACCcgacGGUCCCAGGCu -3'
miRNA:   3'- -CUGU----CCG---GCGGCUGGa---CCGGGGUCUG- -5'
1347 3' -63.8 NC_001335.1 + 4906 0.71 0.129679
Target:  5'- cGGCaAGGCCGCUGGCCc-GCCUCGGGg -3'
miRNA:   3'- -CUG-UCCGGCGGCUGGacCGGGGUCUg -5'
1347 3' -63.8 NC_001335.1 + 36243 0.72 0.099019
Target:  5'- aGACucGGCCGUCGACCgagaaccGGCCUCcGACa -3'
miRNA:   3'- -CUGu-CCGGCGGCUGGa------CCGGGGuCUG- -5'
1347 3' -63.8 NC_001335.1 + 16298 0.74 0.075295
Target:  5'- aGGCA-GCCGCCucGACgCUGGCCCC-GACg -3'
miRNA:   3'- -CUGUcCGGCGG--CUG-GACCGGGGuCUG- -5'
1347 3' -63.8 NC_001335.1 + 12197 1.08 0.000139
Target:  5'- gGACAGGCCGCCGACCUGGCCCCAGACg -3'
miRNA:   3'- -CUGUCCGGCGGCUGGACCGGGGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.