miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1348 5' -53.2 NC_001335.1 + 6983 0.66 0.788925
Target:  5'- gCGcCUGCUUGGCGgAACUCUgUGGc- -3'
miRNA:   3'- aGUuGACGAACCGC-UUGAGGaGCCuu -5'
1348 5' -53.2 NC_001335.1 + 34800 0.66 0.778681
Target:  5'- uUCAACUGCUggguagcuggcUGGCccgaGAAgaUCUCGGAc -3'
miRNA:   3'- -AGUUGACGA-----------ACCG----CUUgaGGAGCCUu -5'
1348 5' -53.2 NC_001335.1 + 35980 0.67 0.725276
Target:  5'- aCAGCU-CUUGGaUGAuCUCCUCGGc- -3'
miRNA:   3'- aGUUGAcGAACC-GCUuGAGGAGCCuu -5'
1348 5' -53.2 NC_001335.1 + 1597 0.67 0.704245
Target:  5'- -gAAgUGCUUGGUGcgguggacgaucucCUCCUCGGAGa -3'
miRNA:   3'- agUUgACGAACCGCuu------------GAGGAGCCUU- -5'
1348 5' -53.2 NC_001335.1 + 49880 0.67 0.69194
Target:  5'- aUCGACg---UGGCGcGCUUCUUGGAAg -3'
miRNA:   3'- -AGUUGacgaACCGCuUGAGGAGCCUU- -5'
1348 5' -53.2 NC_001335.1 + 8560 0.68 0.623925
Target:  5'- gUAGCUGgUguugcUGGCGAGaUCCUUGGAAg -3'
miRNA:   3'- aGUUGACgA-----ACCGCUUgAGGAGCCUU- -5'
1348 5' -53.2 NC_001335.1 + 43552 0.69 0.589867
Target:  5'- cCGAUgucCUUGGCGuACUCCUCGcGGAa -3'
miRNA:   3'- aGUUGac-GAACCGCuUGAGGAGC-CUU- -5'
1348 5' -53.2 NC_001335.1 + 33037 0.71 0.490664
Target:  5'- aCuGCUGCUUGGUGAuucGCUCgUaCGGAGc -3'
miRNA:   3'- aGuUGACGAACCGCU---UGAGgA-GCCUU- -5'
1348 5' -53.2 NC_001335.1 + 12509 1.07 0.001667
Target:  5'- aUCAACUGCUUGGCGAACUCCUCGGAAa -3'
miRNA:   3'- -AGUUGACGAACCGCUUGAGGAGCCUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.