miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
135 3' -63.8 AC_000006.1 + 8890 0.67 0.192745
Target:  5'- uCCAGCgGCGCaGGGGCauCUCGCUg- -3'
miRNA:   3'- uGGUUG-CGCGgCCCCGgcGAGCGAgc -5'
135 3' -63.8 AC_000006.1 + 9767 0.67 0.182891
Target:  5'- cGCCgAGCGCGUCGucGCCGaccuggCGCUCGu -3'
miRNA:   3'- -UGG-UUGCGCGGCccCGGCga----GCGAGC- -5'
135 3' -63.8 AC_000006.1 + 10052 0.67 0.178133
Target:  5'- gGCCccgGGCGCGCCGGccacccagcgcuGGCCGCUCu---- -3'
miRNA:   3'- -UGG---UUGCGCGGCC------------CCGGCGAGcgagc -5'
135 3' -63.8 AC_000006.1 + 22673 0.68 0.147812
Target:  5'- cCCGugGCcCCGGGGCgGaguggccuCUCGCUCc -3'
miRNA:   3'- uGGUugCGcGGCCCCGgC--------GAGCGAGc -5'
135 3' -63.8 AC_000006.1 + 6432 0.69 0.13267
Target:  5'- uGCC-ACuCGCgGGcGGCCauuGCUCGCUCGu -3'
miRNA:   3'- -UGGuUGcGCGgCC-CCGG---CGAGCGAGC- -5'
135 3' -63.8 AC_000006.1 + 23231 0.7 0.122265
Target:  5'- cGCCGACGCGCUccucgcucuGGGGCCcgGCgcgCGCa-- -3'
miRNA:   3'- -UGGUUGCGCGG---------CCCCGG--CGa--GCGagc -5'
135 3' -63.8 AC_000006.1 + 15583 0.71 0.10087
Target:  5'- gGCCGcgGCgGCGgCGGcGGCCGCUCGUcugCGa -3'
miRNA:   3'- -UGGU--UG-CGCgGCC-CCGGCGAGCGa--GC- -5'
135 3' -63.8 AC_000006.1 + 11646 0.71 0.090281
Target:  5'- aGCCGGCGCGCCuuGGaGGCCGCcuaCGgUCc -3'
miRNA:   3'- -UGGUUGCGCGG--CC-CCGGCGa--GCgAGc -5'
135 3' -63.8 AC_000006.1 + 6643 0.76 0.040951
Target:  5'- gGCCGAaauuggUGCGCUGGGGCUGCUCGgCgCGg -3'
miRNA:   3'- -UGGUU------GCGCGGCCCCGGCGAGC-GaGC- -5'
135 3' -63.8 AC_000006.1 + 11026 0.78 0.026635
Target:  5'- cGCCAcgugcGCGCGCgCGGGGCUgauccccgucuGCUCGUUCGg -3'
miRNA:   3'- -UGGU-----UGCGCG-GCCCCGG-----------CGAGCGAGC- -5'
135 3' -63.8 AC_000006.1 + 9999 0.78 0.02588
Target:  5'- gGCCGGCGCGcCCGGGGCCaGgUC-CUCGa -3'
miRNA:   3'- -UGGUUGCGC-GGCCCCGG-CgAGcGAGC- -5'
135 3' -63.8 AC_000006.1 + 16619 1.07 0.000126
Target:  5'- aACCAACGCGCCGGGGCCGCUCGCUCGu -3'
miRNA:   3'- -UGGUUGCGCGGCCCCGGCGAGCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.