Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 135 | 5' | -59.5 | AC_000006.1 | + | 5712 | 0.66 | 0.36782 |
|
Target: 5'- cACCGUGUGCagACaCAuguCCCCuuccuccGCAUCCa -3' miRNA: 3'- -UGGCACGCGa-UG-GU---GGGGu------CGUAGGa -5' |
|||||||
| 135 | 5' | -59.5 | AC_000006.1 | + | 8413 | 0.66 | 0.359094 |
|
Target: 5'- -aCGUGCcuCUGCCGCCCCugcccGCGgggCCg -3' miRNA: 3'- ugGCACGc-GAUGGUGGGGu----CGUa--GGa -5' |
|||||||
| 135 | 5' | -59.5 | AC_000006.1 | + | 33232 | 0.66 | 0.350514 |
|
Target: 5'- gGCCGUccuuuCGCUGCUGCCgCuCAGuCAUCCa -3' miRNA: 3'- -UGGCAc----GCGAUGGUGG-G-GUC-GUAGGa -5' |
|||||||
| 135 | 5' | -59.5 | AC_000006.1 | + | 34212 | 0.66 | 0.350514 |
|
Target: 5'- cGCgGUGUaaGCUACCAcauugugguCCCUGGgGUCCUa -3' miRNA: 3'- -UGgCACG--CGAUGGU---------GGGGUCgUAGGA- -5' |
|||||||
| 135 | 5' | -59.5 | AC_000006.1 | + | 14600 | 0.67 | 0.294589 |
|
Target: 5'- gUCGUGgaCGCUgcucACCACCCCGGaCGUCa- -3' miRNA: 3'- uGGCAC--GCGA----UGGUGGGGUC-GUAGga -5' |
|||||||
| 135 | 5' | -59.5 | AC_000006.1 | + | 5167 | 0.7 | 0.188053 |
|
Target: 5'- cACCGUGCGgagACCACCCuCAcGCGgacCCUg -3' miRNA: 3'- -UGGCACGCga-UGGUGGG-GU-CGUa--GGA- -5' |
|||||||
| 135 | 5' | -59.5 | AC_000006.1 | + | 17588 | 0.71 | 0.15076 |
|
Target: 5'- cGCCGUGCGCcGCguCCCCGcccGCcgCCa -3' miRNA: 3'- -UGGCACGCGaUGguGGGGU---CGuaGGa -5' |
|||||||
| 135 | 5' | -59.5 | AC_000006.1 | + | 19363 | 0.73 | 0.113646 |
|
Target: 5'- gGCC-UGCGCUACCGCUCCAuGCuUCUg -3' miRNA: 3'- -UGGcACGCGAUGGUGGGGU-CGuAGGa -5' |
|||||||
| 135 | 5' | -59.5 | AC_000006.1 | + | 16653 | 1.06 | 0.000296 |
|
Target: 5'- cACCGUGCGCUACCACCCCAGCAUCCUu -3' miRNA: 3'- -UGGCACGCGAUGGUGGGGUCGUAGGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home