miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1350 3' -56.6 NC_001335.1 + 5647 0.66 0.665936
Target:  5'- aCGGCACGuuguccaccagcCCGGuGGAUCAGg-UCa- -3'
miRNA:   3'- gGCCGUGU------------GGCCuCCUAGUCgaAGca -5'
1350 3' -56.6 NC_001335.1 + 13933 0.66 0.644208
Target:  5'- -gGGuCugACCGGAGGAUCGGg----- -3'
miRNA:   3'- ggCC-GugUGGCCUCCUAGUCgaagca -5'
1350 3' -56.6 NC_001335.1 + 8927 0.66 0.633323
Target:  5'- cCCGGUugAuCCGGGGGucgaucUCGGCgugcaUUCGg -3'
miRNA:   3'- -GGCCGugU-GGCCUCCu-----AGUCG-----AAGCa -5'
1350 3' -56.6 NC_001335.1 + 25364 0.66 0.622436
Target:  5'- cUCaGCGCAgCGGAGGAUCcaAGCcUCa- -3'
miRNA:   3'- -GGcCGUGUgGCCUCCUAG--UCGaAGca -5'
1350 3' -56.6 NC_001335.1 + 26063 0.67 0.589864
Target:  5'- gCCGGC-CACCgauacgacgguGGAcaGGAUCAGCagCGa -3'
miRNA:   3'- -GGCCGuGUGG-----------CCU--CCUAGUCGaaGCa -5'
1350 3' -56.6 NC_001335.1 + 37514 0.67 0.589864
Target:  5'- uCCGGUugauaGCC-GAGGAUCGGCUU-GUg -3'
miRNA:   3'- -GGCCGug---UGGcCUCCUAGUCGAAgCA- -5'
1350 3' -56.6 NC_001335.1 + 12019 0.67 0.579064
Target:  5'- uCCuuCGCGCCGuuGAGGAUCGGCU-CGg -3'
miRNA:   3'- -GGccGUGUGGC--CUCCUAGUCGAaGCa -5'
1350 3' -56.6 NC_001335.1 + 46984 0.67 0.568308
Target:  5'- gCCGGUACGCCGGAaGA--GGCUgUGUu -3'
miRNA:   3'- -GGCCGUGUGGCCUcCUagUCGAaGCA- -5'
1350 3' -56.6 NC_001335.1 + 29010 0.7 0.425977
Target:  5'- gCCGGCGgcUGCCGGuGGA-CAGCUcgCGg -3'
miRNA:   3'- -GGCCGU--GUGGCCuCCUaGUCGAa-GCa -5'
1350 3' -56.6 NC_001335.1 + 23314 0.71 0.346419
Target:  5'- aCGGagGCACCGGAGcuucGA-CAGCUUCGg -3'
miRNA:   3'- gGCCg-UGUGGCCUC----CUaGUCGAAGCa -5'
1350 3' -56.6 NC_001335.1 + 30036 0.72 0.322372
Target:  5'- gCCGGCcucgaaGgGCCGGGGGuccacCAGCUUCGc -3'
miRNA:   3'- -GGCCG------UgUGGCCUCCua---GUCGAAGCa -5'
1350 3' -56.6 NC_001335.1 + 41480 0.72 0.322372
Target:  5'- gCCGGCcccgGCACCGGGaaGUCGGCgUUCGUc -3'
miRNA:   3'- -GGCCG----UGUGGCCUccUAGUCG-AAGCA- -5'
1350 3' -56.6 NC_001335.1 + 5662 0.73 0.257816
Target:  5'- gCCGGCGCACCGGAGac-UAGUaUCGa -3'
miRNA:   3'- -GGCCGUGUGGCCUCcuaGUCGaAGCa -5'
1350 3' -56.6 NC_001335.1 + 13092 1.1 0.000651
Target:  5'- aCCGGCACACCGGAGGAUCAGCUUCGUg -3'
miRNA:   3'- -GGCCGUGUGGCCUCCUAGUCGAAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.