miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1350 5' -54.8 NC_001335.1 + 34929 0.66 0.716621
Target:  5'- ---aGCGUcaGGCuuGGUCCuGGCGUAGg -3'
miRNA:   3'- uuugCGCAa-CUGggCUAGG-CCGCAUU- -5'
1350 5' -54.8 NC_001335.1 + 26220 0.66 0.683572
Target:  5'- gAGGCGCGgguucUGGCCgCGAgacagguacUUCGGCGUGc -3'
miRNA:   3'- -UUUGCGCa----ACUGG-GCU---------AGGCCGCAUu -5'
1350 5' -54.8 NC_001335.1 + 36565 0.66 0.661265
Target:  5'- cAACGCGaUGAUgCGGUUCGGCa--- -3'
miRNA:   3'- uUUGCGCaACUGgGCUAGGCCGcauu -5'
1350 5' -54.8 NC_001335.1 + 5314 0.66 0.661265
Target:  5'- cGAAuCGUGUUGGCCgCGAagggcUUgGGCGUGAa -3'
miRNA:   3'- -UUU-GCGCAACUGG-GCU-----AGgCCGCAUU- -5'
1350 5' -54.8 NC_001335.1 + 46891 0.66 0.661265
Target:  5'- cGAACGCuUUcGCCUGAacacagccucuUCCGGCGUAc -3'
miRNA:   3'- -UUUGCGcAAcUGGGCU-----------AGGCCGCAUu -5'
1350 5' -54.8 NC_001335.1 + 37782 0.67 0.650063
Target:  5'- aGAACGCuGUUcGCgCCGGUCaCGGUGUAc -3'
miRNA:   3'- -UUUGCG-CAAcUG-GGCUAG-GCCGCAUu -5'
1350 5' -54.8 NC_001335.1 + 4268 0.67 0.638843
Target:  5'- cGAGgGCugaaccgGACCCGuGUCCGGUGUAGg -3'
miRNA:   3'- -UUUgCGcaa----CUGGGC-UAGGCCGCAUU- -5'
1350 5' -54.8 NC_001335.1 + 40654 0.68 0.582857
Target:  5'- -cACGCGgagaGGCCCaggaucgccGAUCCGGCGa-- -3'
miRNA:   3'- uuUGCGCaa--CUGGG---------CUAGGCCGCauu -5'
1350 5' -54.8 NC_001335.1 + 5174 0.68 0.538771
Target:  5'- --cCGCGUcGACCagCGAUCUGGCGa-- -3'
miRNA:   3'- uuuGCGCAaCUGG--GCUAGGCCGCauu -5'
1350 5' -54.8 NC_001335.1 + 9237 0.72 0.326632
Target:  5'- cGAUGCGUaccUGGCCCgGAUCCuGGCGUu- -3'
miRNA:   3'- uUUGCGCA---ACUGGG-CUAGG-CCGCAuu -5'
1350 5' -54.8 NC_001335.1 + 13056 1.03 0.002275
Target:  5'- cAAACGCGUUGACCCGAUCCGGCGUAAc -3'
miRNA:   3'- -UUUGCGCAACUGGGCUAGGCCGCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.