miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1351 3' -57.1 NC_001335.1 + 13180 1.13 0.000335
Target:  5'- gUCGAGGAGGCUCAUCAGAGCACCGCCg -3'
miRNA:   3'- -AGCUCCUCCGAGUAGUCUCGUGGCGG- -5'
1351 3' -57.1 NC_001335.1 + 1770 0.76 0.144492
Target:  5'- cCGAGGccGGCU-GUCGGAGCGCCGUUg -3'
miRNA:   3'- aGCUCCu-CCGAgUAGUCUCGUGGCGG- -5'
1351 3' -57.1 NC_001335.1 + 43627 0.72 0.279444
Target:  5'- gCGAGGAGuacgccaaGgaCAUCGGAGCACUGUg -3'
miRNA:   3'- aGCUCCUC--------CgaGUAGUCUCGUGGCGg -5'
1351 3' -57.1 NC_001335.1 + 1690 0.72 0.293742
Target:  5'- cUCGAGGAGGgcgcgUUCgGUCGGGGUGUCGCCa -3'
miRNA:   3'- -AGCUCCUCC-----GAG-UAGUCUCGUGGCGG- -5'
1351 3' -57.1 NC_001335.1 + 28853 0.71 0.316247
Target:  5'- cUCGuGGAGGCgaAUCAGAGC-CCGaCa -3'
miRNA:   3'- -AGCuCCUCCGagUAGUCUCGuGGCgG- -5'
1351 3' -57.1 NC_001335.1 + 28443 0.71 0.337593
Target:  5'- cCGAGGAccgugaacuuccucGGCUcCAUCAGGGCAC-GUCc -3'
miRNA:   3'- aGCUCCU--------------CCGA-GUAGUCUCGUGgCGG- -5'
1351 3' -57.1 NC_001335.1 + 1865 0.7 0.356589
Target:  5'- aUCGAGG-GGCUgGUCGauccGAGCAagacCCGCg -3'
miRNA:   3'- -AGCUCCuCCGAgUAGU----CUCGU----GGCGg -5'
1351 3' -57.1 NC_001335.1 + 30147 0.69 0.397687
Target:  5'- gUCGaAGGAGGCgu-UCuGGAGCACCaugcgcuugagagcGCCg -3'
miRNA:   3'- -AGC-UCCUCCGaguAG-UCUCGUGG--------------CGG- -5'
1351 3' -57.1 NC_001335.1 + 16409 0.69 0.438812
Target:  5'- gUCGAGGAgacagcGGCcuugaccgucuccagCGUCGGGGCAgCGUCg -3'
miRNA:   3'- -AGCUCCU------CCGa--------------GUAGUCUCGUgGCGG- -5'
1351 3' -57.1 NC_001335.1 + 11428 0.69 0.44752
Target:  5'- cCGAGGAacGGCguggugcgGUCAGGGUugACUGCCa -3'
miRNA:   3'- aGCUCCU--CCGag------UAGUCUCG--UGGCGG- -5'
1351 3' -57.1 NC_001335.1 + 43687 0.67 0.518255
Target:  5'- aCGAGaAGGCUCuggCcGAGgGCCGCg -3'
miRNA:   3'- aGCUCcUCCGAGua-GuCUCgUGGCGg -5'
1351 3' -57.1 NC_001335.1 + 46599 0.67 0.528738
Target:  5'- cCGGGGAGuacaaGC-Cga-AGAGCACCGCUg -3'
miRNA:   3'- aGCUCCUC-----CGaGuagUCUCGUGGCGG- -5'
1351 3' -57.1 NC_001335.1 + 11326 0.67 0.538239
Target:  5'- cUCGAGGAucGGgUCAccguucagcgggaUCGGcGGCuuACCGCCg -3'
miRNA:   3'- -AGCUCCU--CCgAGU-------------AGUC-UCG--UGGCGG- -5'
1351 3' -57.1 NC_001335.1 + 24726 0.67 0.548863
Target:  5'- cCGAaccGGAGGCUCGUCcacgccaGGAuGUauGCCGCg -3'
miRNA:   3'- aGCU---CCUCCGAGUAG-------UCU-CG--UGGCGg -5'
1351 3' -57.1 NC_001335.1 + 2698 0.67 0.560624
Target:  5'- -aGAGcGGGUUCGUCGGAaCACC-CCg -3'
miRNA:   3'- agCUCcUCCGAGUAGUCUcGUGGcGG- -5'
1351 3' -57.1 NC_001335.1 + 13058 0.67 0.560624
Target:  5'- aUCGAGuGGGGaaaCGUCAagaaGGcCACCGCCa -3'
miRNA:   3'- -AGCUC-CUCCga-GUAGUc---UC-GUGGCGG- -5'
1351 3' -57.1 NC_001335.1 + 38051 0.67 0.560624
Target:  5'- aCGGuGGGGCUCAgCGGAGCccagaaguggaaGCCGUa -3'
miRNA:   3'- aGCUcCUCCGAGUaGUCUCG------------UGGCGg -5'
1351 3' -57.1 NC_001335.1 + 47554 0.66 0.571375
Target:  5'- -gGAGGuaaGGGCgguggccaCAUCGGAGCugUgGCCa -3'
miRNA:   3'- agCUCC---UCCGa-------GUAGUCUCGugG-CGG- -5'
1351 3' -57.1 NC_001335.1 + 3137 0.66 0.582175
Target:  5'- cCGAGGGGuuUC--UAGAGCcGCUGCCg -3'
miRNA:   3'- aGCUCCUCcgAGuaGUCUCG-UGGCGG- -5'
1351 3' -57.1 NC_001335.1 + 17376 0.66 0.582175
Target:  5'- aUCGGcGGcGcGCUCAUCGGcGCGCUGgCg -3'
miRNA:   3'- -AGCU-CCuC-CGAGUAGUCuCGUGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.