miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1351 3' -57.1 NC_001335.1 + 1865 0.7 0.356589
Target:  5'- aUCGAGG-GGCUgGUCGauccGAGCAagacCCGCg -3'
miRNA:   3'- -AGCUCCuCCGAgUAGU----CUCGU----GGCGg -5'
1351 3' -57.1 NC_001335.1 + 28443 0.71 0.337593
Target:  5'- cCGAGGAccgugaacuuccucGGCUcCAUCAGGGCAC-GUCc -3'
miRNA:   3'- aGCUCCU--------------CCGA-GUAGUCUCGUGgCGG- -5'
1351 3' -57.1 NC_001335.1 + 28853 0.71 0.316247
Target:  5'- cUCGuGGAGGCgaAUCAGAGC-CCGaCa -3'
miRNA:   3'- -AGCuCCUCCGagUAGUCUCGuGGCgG- -5'
1351 3' -57.1 NC_001335.1 + 1690 0.72 0.293742
Target:  5'- cUCGAGGAGGgcgcgUUCgGUCGGGGUGUCGCCa -3'
miRNA:   3'- -AGCUCCUCC-----GAG-UAGUCUCGUGGCGG- -5'
1351 3' -57.1 NC_001335.1 + 43627 0.72 0.279444
Target:  5'- gCGAGGAGuacgccaaGgaCAUCGGAGCACUGUg -3'
miRNA:   3'- aGCUCCUC--------CgaGUAGUCUCGUGGCGg -5'
1351 3' -57.1 NC_001335.1 + 1770 0.76 0.144492
Target:  5'- cCGAGGccGGCU-GUCGGAGCGCCGUUg -3'
miRNA:   3'- aGCUCCu-CCGAgUAGUCUCGUGGCGG- -5'
1351 3' -57.1 NC_001335.1 + 13180 1.13 0.000335
Target:  5'- gUCGAGGAGGCUCAUCAGAGCACCGCCg -3'
miRNA:   3'- -AGCUCCUCCGAGUAGUCUCGUGGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.