Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1351 | 3' | -57.1 | NC_001335.1 | + | 1865 | 0.7 | 0.356589 |
Target: 5'- aUCGAGG-GGCUgGUCGauccGAGCAagacCCGCg -3' miRNA: 3'- -AGCUCCuCCGAgUAGU----CUCGU----GGCGg -5' |
|||||||
1351 | 3' | -57.1 | NC_001335.1 | + | 28443 | 0.71 | 0.337593 |
Target: 5'- cCGAGGAccgugaacuuccucGGCUcCAUCAGGGCAC-GUCc -3' miRNA: 3'- aGCUCCU--------------CCGA-GUAGUCUCGUGgCGG- -5' |
|||||||
1351 | 3' | -57.1 | NC_001335.1 | + | 28853 | 0.71 | 0.316247 |
Target: 5'- cUCGuGGAGGCgaAUCAGAGC-CCGaCa -3' miRNA: 3'- -AGCuCCUCCGagUAGUCUCGuGGCgG- -5' |
|||||||
1351 | 3' | -57.1 | NC_001335.1 | + | 1690 | 0.72 | 0.293742 |
Target: 5'- cUCGAGGAGGgcgcgUUCgGUCGGGGUGUCGCCa -3' miRNA: 3'- -AGCUCCUCC-----GAG-UAGUCUCGUGGCGG- -5' |
|||||||
1351 | 3' | -57.1 | NC_001335.1 | + | 43627 | 0.72 | 0.279444 |
Target: 5'- gCGAGGAGuacgccaaGgaCAUCGGAGCACUGUg -3' miRNA: 3'- aGCUCCUC--------CgaGUAGUCUCGUGGCGg -5' |
|||||||
1351 | 3' | -57.1 | NC_001335.1 | + | 1770 | 0.76 | 0.144492 |
Target: 5'- cCGAGGccGGCU-GUCGGAGCGCCGUUg -3' miRNA: 3'- aGCUCCu-CCGAgUAGUCUCGUGGCGG- -5' |
|||||||
1351 | 3' | -57.1 | NC_001335.1 | + | 13180 | 1.13 | 0.000335 |
Target: 5'- gUCGAGGAGGCUCAUCAGAGCACCGCCg -3' miRNA: 3'- -AGCUCCUCCGAGUAGUCUCGUGGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home