miRNA display CGI


Results 21 - 27 of 27 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1351 3' -57.1 NC_001335.1 + 38051 0.67 0.560624
Target:  5'- aCGGuGGGGCUCAgCGGAGCccagaaguggaaGCCGUa -3'
miRNA:   3'- aGCUcCUCCGAGUaGUCUCG------------UGGCGg -5'
1351 3' -57.1 NC_001335.1 + 39562 0.66 0.603889
Target:  5'- cCGAGGGGGaaCGcCAGAcagauguccGCACCgGCCc -3'
miRNA:   3'- aGCUCCUCCgaGUaGUCU---------CGUGG-CGG- -5'
1351 3' -57.1 NC_001335.1 + 43627 0.72 0.279444
Target:  5'- gCGAGGAGuacgccaaGgaCAUCGGAGCACUGUg -3'
miRNA:   3'- aGCUCCUC--------CgaGUAGUCUCGUGGCGg -5'
1351 3' -57.1 NC_001335.1 + 43687 0.67 0.518255
Target:  5'- aCGAGaAGGCUCuggCcGAGgGCCGCg -3'
miRNA:   3'- aGCUCcUCCGAGua-GuCUCgUGGCGg -5'
1351 3' -57.1 NC_001335.1 + 43733 0.66 0.625697
Target:  5'- gCGuGGuuGC-CG-CAGGGCACCGCg -3'
miRNA:   3'- aGCuCCucCGaGUaGUCUCGUGGCGg -5'
1351 3' -57.1 NC_001335.1 + 46599 0.67 0.528738
Target:  5'- cCGGGGAGuacaaGC-Cga-AGAGCACCGCUg -3'
miRNA:   3'- aGCUCCUC-----CGaGuagUCUCGUGGCGG- -5'
1351 3' -57.1 NC_001335.1 + 47554 0.66 0.571375
Target:  5'- -gGAGGuaaGGGCgguggccaCAUCGGAGCugUgGCCa -3'
miRNA:   3'- agCUCC---UCCGa-------GUAGUCUCGugG-CGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.