Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1351 | 3' | -57.1 | NC_001335.1 | + | 38051 | 0.67 | 0.560624 |
Target: 5'- aCGGuGGGGCUCAgCGGAGCccagaaguggaaGCCGUa -3' miRNA: 3'- aGCUcCUCCGAGUaGUCUCG------------UGGCGg -5' |
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1351 | 3' | -57.1 | NC_001335.1 | + | 39562 | 0.66 | 0.603889 |
Target: 5'- cCGAGGGGGaaCGcCAGAcagauguccGCACCgGCCc -3' miRNA: 3'- aGCUCCUCCgaGUaGUCU---------CGUGG-CGG- -5' |
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1351 | 3' | -57.1 | NC_001335.1 | + | 43627 | 0.72 | 0.279444 |
Target: 5'- gCGAGGAGuacgccaaGgaCAUCGGAGCACUGUg -3' miRNA: 3'- aGCUCCUC--------CgaGUAGUCUCGUGGCGg -5' |
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1351 | 3' | -57.1 | NC_001335.1 | + | 43687 | 0.67 | 0.518255 |
Target: 5'- aCGAGaAGGCUCuggCcGAGgGCCGCg -3' miRNA: 3'- aGCUCcUCCGAGua-GuCUCgUGGCGg -5' |
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1351 | 3' | -57.1 | NC_001335.1 | + | 43733 | 0.66 | 0.625697 |
Target: 5'- gCGuGGuuGC-CG-CAGGGCACCGCg -3' miRNA: 3'- aGCuCCucCGaGUaGUCUCGUGGCGg -5' |
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1351 | 3' | -57.1 | NC_001335.1 | + | 46599 | 0.67 | 0.528738 |
Target: 5'- cCGGGGAGuacaaGC-Cga-AGAGCACCGCUg -3' miRNA: 3'- aGCUCCUC-----CGaGuagUCUCGUGGCGG- -5' |
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1351 | 3' | -57.1 | NC_001335.1 | + | 47554 | 0.66 | 0.571375 |
Target: 5'- -gGAGGuaaGGGCgguggccaCAUCGGAGCugUgGCCa -3' miRNA: 3'- agCUCC---UCCGa-------GUAGUCUCGugG-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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