miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1351 5' -52.8 NC_001335.1 + 50806 0.66 0.849425
Target:  5'- aUGGCGGU-GCCUaccgugaucUCUuccaacUGGCGUUcagCCa -3'
miRNA:   3'- gACCGCCAcCGGA---------AGA------ACUGCAAa--GG- -5'
1351 5' -52.8 NC_001335.1 + 51848 0.66 0.840622
Target:  5'- gCUGGUcucGGUGGCaucgCUUGACaGUcgCCc -3'
miRNA:   3'- -GACCG---CCACCGgaa-GAACUG-CAaaGG- -5'
1351 5' -52.8 NC_001335.1 + 25132 0.68 0.706113
Target:  5'- gCUGGCGGcuGCCUUCUUcgcccgguccugugGAgGggUCCa -3'
miRNA:   3'- -GACCGCCacCGGAAGAA--------------CUgCaaAGG- -5'
1351 5' -52.8 NC_001335.1 + 22594 0.7 0.620333
Target:  5'- gCUGGCGGcgUGGCCggCggUGACGacUUCg -3'
miRNA:   3'- -GACCGCC--ACCGGaaGa-ACUGCaaAGG- -5'
1351 5' -52.8 NC_001335.1 + 46447 0.71 0.575707
Target:  5'- -cGGCGGUcaGGCgUUCcUUGACGg--CCu -3'
miRNA:   3'- gaCCGCCA--CCGgAAG-AACUGCaaaGG- -5'
1351 5' -52.8 NC_001335.1 + 29942 0.72 0.499752
Target:  5'- -cGGCGGcuagcuUGGCCaugagcUUCUUGACGUUcucggccuggUCCu -3'
miRNA:   3'- gaCCGCC------ACCGG------AAGAACUGCAA----------AGG- -5'
1351 5' -52.8 NC_001335.1 + 13145 1.11 0.001224
Target:  5'- uCUGGCGGUGGCCUUCUUGACGUUUCCc -3'
miRNA:   3'- -GACCGCCACCGGAAGAACUGCAAAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.